Gene : Seita.5G316600 S. italica v2.2
Defline:  (1 of 1) KOG4837 - Uncharacterized conserved protein Genomic Order:  3166
Name:  ? Seita.5G316600 Secondary Identifier:  ? PAC:32686299
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G316600 0.5kb upstream 0.5kb upstream 6881 true scaffold_5: 36750496-36757376 Setaria italica
Seita.5G316600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36750496-36750995 Setaria italica
Seita.5G316600 0.5kb downstream 0.5kb downstream 6881 true scaffold_5: 36750996-36757876 Setaria italica
Seita.5G316600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36757377-36757876 Setaria italica
Seita.5G316600 1.0kb upstream 1.0kb upstream 7381 true scaffold_5: 36749996-36757376 Setaria italica
Seita.5G316600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36749996-36750995 Setaria italica
Seita.5G316600 1.0kb downstream 1.0kb downstream 7381 true scaffold_5: 36750996-36758376 Setaria italica
Seita.5G316600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36757377-36758376 Setaria italica
Seita.5G316600 2.0kb upstream 2.0kb upstream 8381 true scaffold_5: 36748996-36757376 Setaria italica
Seita.5G316600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36748996-36750995 Setaria italica
Seita.5G316600 2.0kb downstream 2.0kb downstream 8381 true scaffold_5: 36750996-36759376 Setaria italica
Seita.5G316600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36757377-36759376 Setaria italica
Seita.5G316600 5.0kb upstream 5.0kb upstream 11381 true scaffold_5: 36745996-36757376 Setaria italica
Seita.5G316600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36745996-36750995 Setaria italica
Seita.5G316600 5.0kb downstream 5.0kb downstream 11381 true scaffold_5: 36750996-36762376 Setaria italica
Seita.5G316600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36757377-36762376 Setaria italica
Seita.5G316600 10.0kb upstream 10.0kb upstream 16381 true scaffold_5: 36740996-36757376 Setaria italica
Seita.5G316600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36740996-36750995 Setaria italica
Seita.5G316600 10.0kb downstream 10.0kb downstream 16381 true scaffold_5: 36750996-36767376 Setaria italica
Seita.5G316600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36757377-36767376 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041163 5273 Angiosperm View MSA
122180719 5267 Panicoideae View MSA
124573350 5269 Grass View MSA
121346685 5274 Embryophyte View MSA
123425095 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.894        
cufflinks 0.827        
cufflinks 0.666        
cufflinks 0.627        
cufflinks 0.736        
cufflinks 0.748        
cufflinks 0.907        
cufflinks 1.263       High
cufflinks 1.389       High
cufflinks 0.85        
cufflinks 0.559       Low
cufflinks 0.702        
cufflinks 0.634        
cufflinks 1.357       High
cufflinks 0.612        
cufflinks 1.145       High
cufflinks 0.777        
cufflinks 0.613        
cufflinks 0.734        
cufflinks 0.599       Low

0 Strain