Gene : Seita.5G315700 S. italica v2.2
Defline:  (1 of 4) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  3157
Name:  ? Seita.5G315700 Secondary Identifier:  ? PAC:32682054
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7101 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G315700 0.5kb upstream 0.5kb upstream 3559 true scaffold_5: 36677477-36681035 Setaria italica
Seita.5G315700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36680536-36681035 Setaria italica
Seita.5G315700 0.5kb downstream 0.5kb downstream 3559 true scaffold_5: 36676977-36680535 Setaria italica
Seita.5G315700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36676977-36677476 Setaria italica
Seita.5G315700 1.0kb upstream 1.0kb upstream 4059 true scaffold_5: 36677477-36681535 Setaria italica
Seita.5G315700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36680536-36681535 Setaria italica
Seita.5G315700 1.0kb downstream 1.0kb downstream 4059 true scaffold_5: 36676477-36680535 Setaria italica
Seita.5G315700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36676477-36677476 Setaria italica
Seita.5G315700 2.0kb upstream 2.0kb upstream 5059 true scaffold_5: 36677477-36682535 Setaria italica
Seita.5G315700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36680536-36682535 Setaria italica
Seita.5G315700 2.0kb downstream 2.0kb downstream 5059 true scaffold_5: 36675477-36680535 Setaria italica
Seita.5G315700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36675477-36677476 Setaria italica
Seita.5G315700 5.0kb upstream 5.0kb upstream 8059 true scaffold_5: 36677477-36685535 Setaria italica
Seita.5G315700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36680536-36685535 Setaria italica
Seita.5G315700 5.0kb downstream 5.0kb downstream 8059 true scaffold_5: 36672477-36680535 Setaria italica
Seita.5G315700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36672477-36677476 Setaria italica
Seita.5G315700 10.0kb upstream 10.0kb upstream 13059 true scaffold_5: 36677477-36690535 Setaria italica
Seita.5G315700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36680536-36690535 Setaria italica
Seita.5G315700 10.0kb downstream 10.0kb downstream 13059 true scaffold_5: 36667477-36680535 Setaria italica
Seita.5G315700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36667477-36677476 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117608 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.922       High
cufflinks 0.143        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.121     Low  
cufflinks 0.013     Low  
cufflinks 0.006     Low  
cufflinks 0.003     Low  
cufflinks 4.388       High
cufflinks 2.485       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.165        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.005     Low  
cufflinks 0.003     Low  

0 Strain