Gene : Seita.5G315600 S. italica v2.2
Defline:  (1 of 4) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  3156
Name:  ? Seita.5G315600 Secondary Identifier:  ? PAC:32683746
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7101 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G315600 0.5kb upstream 0.5kb upstream 4913 true scaffold_5: 36666725-36671637 Setaria italica
Seita.5G315600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36671138-36671637 Setaria italica
Seita.5G315600 0.5kb downstream 0.5kb downstream 4913 true scaffold_5: 36666225-36671137 Setaria italica
Seita.5G315600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36666225-36666724 Setaria italica
Seita.5G315600 1.0kb upstream 1.0kb upstream 5413 true scaffold_5: 36666725-36672137 Setaria italica
Seita.5G315600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36671138-36672137 Setaria italica
Seita.5G315600 1.0kb downstream 1.0kb downstream 5413 true scaffold_5: 36665725-36671137 Setaria italica
Seita.5G315600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36665725-36666724 Setaria italica
Seita.5G315600 2.0kb upstream 2.0kb upstream 6413 true scaffold_5: 36666725-36673137 Setaria italica
Seita.5G315600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36671138-36673137 Setaria italica
Seita.5G315600 2.0kb downstream 2.0kb downstream 6413 true scaffold_5: 36664725-36671137 Setaria italica
Seita.5G315600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36664725-36666724 Setaria italica
Seita.5G315600 5.0kb upstream 5.0kb upstream 9413 true scaffold_5: 36666725-36676137 Setaria italica
Seita.5G315600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36671138-36676137 Setaria italica
Seita.5G315600 5.0kb downstream 5.0kb downstream 9413 true scaffold_5: 36661725-36671137 Setaria italica
Seita.5G315600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36661725-36666724 Setaria italica
Seita.5G315600 10.0kb upstream 10.0kb upstream 14413 true scaffold_5: 36666725-36681137 Setaria italica
Seita.5G315600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36671138-36681137 Setaria italica
Seita.5G315600 10.0kb downstream 10.0kb downstream 14413 true scaffold_5: 36656725-36671137 Setaria italica
Seita.5G315600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36656725-36666724 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117608 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low Low
cufflinks 2.135       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low  
cufflinks 0.915       High
cufflinks 0.087     Low  
cufflinks 0.381        
cufflinks 0.124        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  

0 Strain