Gene : Seita.5G315500 S. italica v2.2
Defline:  (1 of 3) PTHR11638//PTHR11638:SF116 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  3155
Name:  ? Seita.5G315500 Secondary Identifier:  ? PAC:32684607
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G315500 0.5kb upstream 0.5kb upstream 4425 true scaffold_5: 36657973-36662397 Setaria italica
Seita.5G315500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 36657973-36658472 Setaria italica
Seita.5G315500 0.5kb downstream 0.5kb downstream 4425 true scaffold_5: 36658473-36662897 Setaria italica
Seita.5G315500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 36662398-36662897 Setaria italica
Seita.5G315500 1.0kb upstream 1.0kb upstream 4925 true scaffold_5: 36657473-36662397 Setaria italica
Seita.5G315500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 36657473-36658472 Setaria italica
Seita.5G315500 1.0kb downstream 1.0kb downstream 4925 true scaffold_5: 36658473-36663397 Setaria italica
Seita.5G315500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 36662398-36663397 Setaria italica
Seita.5G315500 2.0kb upstream 2.0kb upstream 5925 true scaffold_5: 36656473-36662397 Setaria italica
Seita.5G315500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 36656473-36658472 Setaria italica
Seita.5G315500 2.0kb downstream 2.0kb downstream 5925 true scaffold_5: 36658473-36664397 Setaria italica
Seita.5G315500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 36662398-36664397 Setaria italica
Seita.5G315500 5.0kb upstream 5.0kb upstream 8925 true scaffold_5: 36653473-36662397 Setaria italica
Seita.5G315500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 36653473-36658472 Setaria italica
Seita.5G315500 5.0kb downstream 5.0kb downstream 8925 true scaffold_5: 36658473-36667397 Setaria italica
Seita.5G315500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 36662398-36667397 Setaria italica
Seita.5G315500 10.0kb upstream 10.0kb upstream 13925 true scaffold_5: 36648473-36662397 Setaria italica
Seita.5G315500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 36648473-36658472 Setaria italica
Seita.5G315500 10.0kb downstream 10.0kb downstream 13925 true scaffold_5: 36658473-36672397 Setaria italica
Seita.5G315500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 36662398-36672397 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192956 5267 Panicoideae View MSA
124590483 5269 Grass View MSA
122050456 5273 Angiosperm View MSA
121347252 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.787        
cufflinks 1.404       High
cufflinks 0.093       Low
cufflinks 0.064     Low Low
cufflinks 0.08     Low Low
cufflinks 0.741        
cufflinks 0.356        
cufflinks 0.351        
cufflinks 0.245        
cufflinks 0.973        
cufflinks 0.677        
cufflinks 1.079        
cufflinks 0.313        
cufflinks 0.172        
cufflinks 0.861        
cufflinks 0.238        
cufflinks 0.56        
cufflinks 1.866       High
cufflinks 0.851        
cufflinks 0.632        

0 Strain