Gene : Seita.5G398500 S. italica v2.2
Defline:  (1 of 1) PTHR10133:SF38 - 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  3985
Name:  ? Seita.5G398500 Secondary Identifier:  ? PAC:32684665
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G398500 0.5kb upstream 0.5kb upstream 2782 true scaffold_5: 42698698-42701479 Setaria italica
Seita.5G398500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42700980-42701479 Setaria italica
Seita.5G398500 0.5kb downstream 0.5kb downstream 2782 true scaffold_5: 42698198-42700979 Setaria italica
Seita.5G398500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42698198-42698697 Setaria italica
Seita.5G398500 1.0kb upstream 1.0kb upstream 3282 true scaffold_5: 42698698-42701979 Setaria italica
Seita.5G398500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42700980-42701979 Setaria italica
Seita.5G398500 1.0kb downstream 1.0kb downstream 3282 true scaffold_5: 42697698-42700979 Setaria italica
Seita.5G398500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42697698-42698697 Setaria italica
Seita.5G398500 2.0kb upstream 2.0kb upstream 4282 true scaffold_5: 42698698-42702979 Setaria italica
Seita.5G398500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42700980-42702979 Setaria italica
Seita.5G398500 2.0kb downstream 2.0kb downstream 4282 true scaffold_5: 42696698-42700979 Setaria italica
Seita.5G398500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42696698-42698697 Setaria italica
Seita.5G398500 5.0kb upstream 5.0kb upstream 7282 true scaffold_5: 42698698-42705979 Setaria italica
Seita.5G398500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42700980-42705979 Setaria italica
Seita.5G398500 5.0kb downstream 5.0kb downstream 7282 true scaffold_5: 42693698-42700979 Setaria italica
Seita.5G398500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42693698-42698697 Setaria italica
Seita.5G398500 10.0kb upstream 10.0kb upstream 12282 true scaffold_5: 42698698-42710979 Setaria italica
Seita.5G398500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42700980-42710979 Setaria italica
Seita.5G398500 10.0kb downstream 10.0kb downstream 12282 true scaffold_5: 42688698-42700979 Setaria italica
Seita.5G398500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42688698-42698697 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041187 5273 Angiosperm View MSA
122175350 5267 Panicoideae View MSA
124572689 5269 Grass View MSA
121344159 5274 Embryophyte View MSA
123425715 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.03        
cufflinks 6.041        
cufflinks 6.705        
cufflinks 5.06        
cufflinks 8.263        
cufflinks 5.697        
cufflinks 9.08        
cufflinks 12.986       High
cufflinks 20.86     High High
cufflinks 5.21        
cufflinks 4.637        
cufflinks 7.144        
cufflinks 4.676        
cufflinks 10.322       High
cufflinks 5.029        
cufflinks 6.246        
cufflinks 5.343        
cufflinks 2.972       Low
cufflinks 5.834        
cufflinks 7.597        

0 Strain