Gene : Seita.5G398800 S. italica v2.2
Defline:  (1 of 1) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  3988
Name:  ? Seita.5G398800 Secondary Identifier:  ? PAC:32680801
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYSYN-PWY Setaria italica pathologic  
Sitalica PWY-2161 Setaria italica pathologic  
Sitalica PWY-3841 Setaria italica pathologic  
Sitalica SER-GLYSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G398800 0.5kb upstream 0.5kb upstream 4777 true scaffold_5: 42712249-42717025 Setaria italica
Seita.5G398800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42712249-42712748 Setaria italica
Seita.5G398800 0.5kb downstream 0.5kb downstream 4777 true scaffold_5: 42712749-42717525 Setaria italica
Seita.5G398800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42717026-42717525 Setaria italica
Seita.5G398800 1.0kb upstream 1.0kb upstream 5277 true scaffold_5: 42711749-42717025 Setaria italica
Seita.5G398800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42711749-42712748 Setaria italica
Seita.5G398800 1.0kb downstream 1.0kb downstream 5277 true scaffold_5: 42712749-42718025 Setaria italica
Seita.5G398800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42717026-42718025 Setaria italica
Seita.5G398800 2.0kb upstream 2.0kb upstream 6277 true scaffold_5: 42710749-42717025 Setaria italica
Seita.5G398800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42710749-42712748 Setaria italica
Seita.5G398800 2.0kb downstream 2.0kb downstream 6277 true scaffold_5: 42712749-42719025 Setaria italica
Seita.5G398800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42717026-42719025 Setaria italica
Seita.5G398800 5.0kb upstream 5.0kb upstream 9277 true scaffold_5: 42707749-42717025 Setaria italica
Seita.5G398800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42707749-42712748 Setaria italica
Seita.5G398800 5.0kb downstream 5.0kb downstream 9277 true scaffold_5: 42712749-42722025 Setaria italica
Seita.5G398800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42717026-42722025 Setaria italica
Seita.5G398800 10.0kb upstream 10.0kb upstream 14277 true scaffold_5: 42702749-42717025 Setaria italica
Seita.5G398800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42702749-42712748 Setaria italica
Seita.5G398800 10.0kb downstream 10.0kb downstream 14277 true scaffold_5: 42712749-42727025 Setaria italica
Seita.5G398800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42717026-42727025 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176640 5267 Panicoideae View MSA
124586841 5269 Grass View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.559        
cufflinks 18.926     High High
cufflinks 8.158       Low
cufflinks 7.38       Low
cufflinks 5.784       Low
cufflinks 16.405     High  
cufflinks 13.45     High  
cufflinks 9.624        
cufflinks 10.099        
cufflinks 10.6        
cufflinks 16.198     High  
cufflinks 17.155     High High
cufflinks 15.739     High  
cufflinks 10.593        
cufflinks 20.865     High High
cufflinks 8.55        
cufflinks 17.251     High High
cufflinks 7.365       Low
cufflinks 10.697        
cufflinks 16.72     High  

0 Strain