Gene : Seita.5G399200 S. italica v2.2
Defline:  (1 of 4) PTHR23421//PTHR23421:SF77 - BETA-GALACTOSIDASE RELATED Genomic Order:  3992
Name:  ? Seita.5G399200 Secondary Identifier:  ? PAC:32683430
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G399200 0.5kb upstream 0.5kb upstream 7339 true scaffold_5: 42738066-42745404 Setaria italica
Seita.5G399200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42738066-42738565 Setaria italica
Seita.5G399200 0.5kb downstream 0.5kb downstream 7339 true scaffold_5: 42738566-42745904 Setaria italica
Seita.5G399200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42745405-42745904 Setaria italica
Seita.5G399200 1.0kb upstream 1.0kb upstream 7839 true scaffold_5: 42737566-42745404 Setaria italica
Seita.5G399200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42737566-42738565 Setaria italica
Seita.5G399200 1.0kb downstream 1.0kb downstream 7839 true scaffold_5: 42738566-42746404 Setaria italica
Seita.5G399200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42745405-42746404 Setaria italica
Seita.5G399200 2.0kb upstream 2.0kb upstream 8839 true scaffold_5: 42736566-42745404 Setaria italica
Seita.5G399200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42736566-42738565 Setaria italica
Seita.5G399200 2.0kb downstream 2.0kb downstream 8839 true scaffold_5: 42738566-42747404 Setaria italica
Seita.5G399200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42745405-42747404 Setaria italica
Seita.5G399200 5.0kb upstream 5.0kb upstream 11839 true scaffold_5: 42733566-42745404 Setaria italica
Seita.5G399200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42733566-42738565 Setaria italica
Seita.5G399200 5.0kb downstream 5.0kb downstream 11839 true scaffold_5: 42738566-42750404 Setaria italica
Seita.5G399200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42745405-42750404 Setaria italica
Seita.5G399200 10.0kb upstream 10.0kb upstream 16839 true scaffold_5: 42728566-42745404 Setaria italica
Seita.5G399200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42728566-42738565 Setaria italica
Seita.5G399200 10.0kb downstream 10.0kb downstream 16839 true scaffold_5: 42738566-42755404 Setaria italica
Seita.5G399200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42745405-42755404 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199889 5267 Panicoideae View MSA
124584297 5269 Grass View MSA
122045958 5273 Angiosperm View MSA
121310530 5274 Embryophyte View MSA
123428653 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.1     Low  
cufflinks 0.78       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.229        
cufflinks 0.038     Low  
cufflinks 0.09     Low  
cufflinks 0.101     Low  
cufflinks 0.008     Low  
cufflinks 0.065     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain