Gene : Seita.5G400600 S. italica v2.2
Defline:  (1 of 1) PTHR15856//PTHR15856:SF29 - PHD FINGER PROTEIN 20-RELATED Genomic Order:  4006
Name:  ? Seita.5G400600 Secondary Identifier:  ? PAC:32680967
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G400600 0.5kb upstream 0.5kb upstream 3837 true scaffold_5: 42855349-42859185 Setaria italica
Seita.5G400600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42855349-42855848 Setaria italica
Seita.5G400600 0.5kb downstream 0.5kb downstream 3837 true scaffold_5: 42855849-42859685 Setaria italica
Seita.5G400600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42859186-42859685 Setaria italica
Seita.5G400600 1.0kb upstream 1.0kb upstream 4337 true scaffold_5: 42854849-42859185 Setaria italica
Seita.5G400600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42854849-42855848 Setaria italica
Seita.5G400600 1.0kb downstream 1.0kb downstream 4337 true scaffold_5: 42855849-42860185 Setaria italica
Seita.5G400600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42859186-42860185 Setaria italica
Seita.5G400600 2.0kb upstream 2.0kb upstream 5337 true scaffold_5: 42853849-42859185 Setaria italica
Seita.5G400600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42853849-42855848 Setaria italica
Seita.5G400600 2.0kb downstream 2.0kb downstream 5337 true scaffold_5: 42855849-42861185 Setaria italica
Seita.5G400600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42859186-42861185 Setaria italica
Seita.5G400600 5.0kb upstream 5.0kb upstream 8337 true scaffold_5: 42850849-42859185 Setaria italica
Seita.5G400600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42850849-42855848 Setaria italica
Seita.5G400600 5.0kb downstream 5.0kb downstream 8337 true scaffold_5: 42855849-42864185 Setaria italica
Seita.5G400600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42859186-42864185 Setaria italica
Seita.5G400600 10.0kb upstream 10.0kb upstream 13337 true scaffold_5: 42845849-42859185 Setaria italica
Seita.5G400600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42845849-42855848 Setaria italica
Seita.5G400600 10.0kb downstream 10.0kb downstream 13337 true scaffold_5: 42855849-42869185 Setaria italica
Seita.5G400600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42859186-42869185 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181732 5267 Panicoideae View MSA
124569000 5269 Grass View MSA
122047427 5273 Angiosperm View MSA
121310739 5274 Embryophyte View MSA
123348151 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.56        
cufflinks 13.857     High  
cufflinks 8.287        
cufflinks 7.473        
cufflinks 4.769       Low
cufflinks 12.609        
cufflinks 7.321        
cufflinks 5.427        
cufflinks 3.822       Low
cufflinks 7.545        
cufflinks 10.692        
cufflinks 20.18     High High
cufflinks 9.39        
cufflinks 6.593        
cufflinks 9.192        
cufflinks 11.899        
cufflinks 8.973        
cufflinks 45.968     High High
cufflinks 6.962        
cufflinks 7.036        

0 Strain