Gene : Seita.5G400500 S. italica v2.2
Defline:  (1 of 2) PTHR11214//PTHR11214:SF100 - BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE Genomic Order:  4005
Name:  ? Seita.5G400500 Secondary Identifier:  ? PAC:32685416
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G400500 0.5kb upstream 0.5kb upstream 2990 true scaffold_5: 42849437-42852426 Setaria italica
Seita.5G400500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42849437-42849936 Setaria italica
Seita.5G400500 0.5kb downstream 0.5kb downstream 2990 true scaffold_5: 42849937-42852926 Setaria italica
Seita.5G400500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42852427-42852926 Setaria italica
Seita.5G400500 1.0kb upstream 1.0kb upstream 3490 true scaffold_5: 42848937-42852426 Setaria italica
Seita.5G400500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42848937-42849936 Setaria italica
Seita.5G400500 1.0kb downstream 1.0kb downstream 3490 true scaffold_5: 42849937-42853426 Setaria italica
Seita.5G400500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42852427-42853426 Setaria italica
Seita.5G400500 2.0kb upstream 2.0kb upstream 4490 true scaffold_5: 42847937-42852426 Setaria italica
Seita.5G400500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42847937-42849936 Setaria italica
Seita.5G400500 2.0kb downstream 2.0kb downstream 4490 true scaffold_5: 42849937-42854426 Setaria italica
Seita.5G400500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42852427-42854426 Setaria italica
Seita.5G400500 5.0kb upstream 5.0kb upstream 7490 true scaffold_5: 42844937-42852426 Setaria italica
Seita.5G400500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42844937-42849936 Setaria italica
Seita.5G400500 5.0kb downstream 5.0kb downstream 7490 true scaffold_5: 42849937-42857426 Setaria italica
Seita.5G400500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42852427-42857426 Setaria italica
Seita.5G400500 10.0kb upstream 10.0kb upstream 12490 true scaffold_5: 42839937-42852426 Setaria italica
Seita.5G400500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42839937-42849936 Setaria italica
Seita.5G400500 10.0kb downstream 10.0kb downstream 12490 true scaffold_5: 42849937-42862426 Setaria italica
Seita.5G400500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42852427-42862426 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186708 5267 Panicoideae View MSA
124577134 5269 Grass View MSA
122048102 5273 Angiosperm View MSA
121348547 5274 Embryophyte View MSA
123427932 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.527       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.007     Low  
cufflinks 5.319       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.015     Low  
cufflinks 0.061     Low  
cufflinks 0.008     Low  
cufflinks 0.007     Low  

0 Strain