Gene : Seita.5G403400 S. italica v2.2
Defline:  (1 of 4) 6.5.1.1 - DNA ligase (ATP) / Sealase Genomic Order:  4034
Name:  ? Seita.5G403400 Secondary Identifier:  ? PAC:32683477
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G403400 0.5kb upstream 0.5kb upstream 3947 true scaffold_5: 43033594-43037540 Setaria italica
Seita.5G403400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43033594-43034093 Setaria italica
Seita.5G403400 0.5kb downstream 0.5kb downstream 3947 true scaffold_5: 43034094-43038040 Setaria italica
Seita.5G403400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43037541-43038040 Setaria italica
Seita.5G403400 1.0kb upstream 1.0kb upstream 4447 true scaffold_5: 43033094-43037540 Setaria italica
Seita.5G403400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43033094-43034093 Setaria italica
Seita.5G403400 1.0kb downstream 1.0kb downstream 4447 true scaffold_5: 43034094-43038540 Setaria italica
Seita.5G403400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43037541-43038540 Setaria italica
Seita.5G403400 2.0kb upstream 2.0kb upstream 5447 true scaffold_5: 43032094-43037540 Setaria italica
Seita.5G403400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43032094-43034093 Setaria italica
Seita.5G403400 2.0kb downstream 2.0kb downstream 5447 true scaffold_5: 43034094-43039540 Setaria italica
Seita.5G403400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43037541-43039540 Setaria italica
Seita.5G403400 5.0kb upstream 5.0kb upstream 8447 true scaffold_5: 43029094-43037540 Setaria italica
Seita.5G403400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43029094-43034093 Setaria italica
Seita.5G403400 5.0kb downstream 5.0kb downstream 8447 true scaffold_5: 43034094-43042540 Setaria italica
Seita.5G403400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43037541-43042540 Setaria italica
Seita.5G403400 10.0kb upstream 10.0kb upstream 13447 true scaffold_5: 43024094-43037540 Setaria italica
Seita.5G403400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43024094-43034093 Setaria italica
Seita.5G403400 10.0kb downstream 10.0kb downstream 13447 true scaffold_5: 43034094-43047540 Setaria italica
Seita.5G403400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43037541-43047540 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182968 5267 Panicoideae View MSA
124578084 5269 Grass View MSA
122043083 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.001        
cufflinks 7.988        
cufflinks 12.054     High  
cufflinks 13.29     High  
cufflinks 13.143     High  
cufflinks 9.466        
cufflinks 11.077        
cufflinks 13.309        
cufflinks 9.179        
cufflinks 7.489       Low
cufflinks 9.08        
cufflinks 20.977     High High
cufflinks 8.1        
cufflinks 9.435        
cufflinks 7.986        
cufflinks 21.885     High High
cufflinks 7.662       Low
cufflinks 25.65     High High
cufflinks 11.435     High  
cufflinks 7.654       Low

0 Strain