Gene : Seita.5G405200 S. italica v2.2
Defline:  (1 of 2) PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING Genomic Order:  4052
Name:  ? Seita.5G405200 Secondary Identifier:  ? PAC:32682412
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G405200 0.5kb upstream 0.5kb upstream 5562 true scaffold_5: 43203251-43208812 Setaria italica
Seita.5G405200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43203251-43203750 Setaria italica
Seita.5G405200 0.5kb downstream 0.5kb downstream 5562 true scaffold_5: 43203751-43209312 Setaria italica
Seita.5G405200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43208813-43209312 Setaria italica
Seita.5G405200 1.0kb upstream 1.0kb upstream 6062 true scaffold_5: 43202751-43208812 Setaria italica
Seita.5G405200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43202751-43203750 Setaria italica
Seita.5G405200 1.0kb downstream 1.0kb downstream 6062 true scaffold_5: 43203751-43209812 Setaria italica
Seita.5G405200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43208813-43209812 Setaria italica
Seita.5G405200 2.0kb upstream 2.0kb upstream 7062 true scaffold_5: 43201751-43208812 Setaria italica
Seita.5G405200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43201751-43203750 Setaria italica
Seita.5G405200 2.0kb downstream 2.0kb downstream 7062 true scaffold_5: 43203751-43210812 Setaria italica
Seita.5G405200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43208813-43210812 Setaria italica
Seita.5G405200 5.0kb upstream 5.0kb upstream 10062 true scaffold_5: 43198751-43208812 Setaria italica
Seita.5G405200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43198751-43203750 Setaria italica
Seita.5G405200 5.0kb downstream 5.0kb downstream 10062 true scaffold_5: 43203751-43213812 Setaria italica
Seita.5G405200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43208813-43213812 Setaria italica
Seita.5G405200 10.0kb upstream 10.0kb upstream 15062 true scaffold_5: 43193751-43208812 Setaria italica
Seita.5G405200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43193751-43203750 Setaria italica
Seita.5G405200 10.0kb downstream 10.0kb downstream 15062 true scaffold_5: 43203751-43218812 Setaria italica
Seita.5G405200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43208813-43218812 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176885 5267 Panicoideae View MSA
124572302 5269 Grass View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.474        
cufflinks 3.702       Low
cufflinks 6.843        
cufflinks 8.588        
cufflinks 7.856        
cufflinks 4.121       Low
cufflinks 7.519        
cufflinks 4.426       Low
cufflinks 9.93        
cufflinks 3.874       Low
cufflinks 4.708       Low
cufflinks 14.996     High High
cufflinks 10.729        
cufflinks 7.805        
cufflinks 8.902        
cufflinks 6.494        
cufflinks 6.432        
cufflinks 20.971     High High
cufflinks 9.518        
cufflinks 6.993        

0 Strain