Gene : Seita.5G404200 S. italica v2.2
Defline:  (1 of 9) KOG2922 - Uncharacterized conserved protein Genomic Order:  4042
Name:  ? Seita.5G404200 Secondary Identifier:  ? PAC:32684808
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G404200 0.5kb upstream 0.5kb upstream 5083 true scaffold_5: 43093970-43099052 Setaria italica
Seita.5G404200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43093970-43094469 Setaria italica
Seita.5G404200 0.5kb downstream 0.5kb downstream 5083 true scaffold_5: 43094470-43099552 Setaria italica
Seita.5G404200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43099053-43099552 Setaria italica
Seita.5G404200 1.0kb upstream 1.0kb upstream 5583 true scaffold_5: 43093470-43099052 Setaria italica
Seita.5G404200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43093470-43094469 Setaria italica
Seita.5G404200 1.0kb downstream 1.0kb downstream 5583 true scaffold_5: 43094470-43100052 Setaria italica
Seita.5G404200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43099053-43100052 Setaria italica
Seita.5G404200 2.0kb upstream 2.0kb upstream 6583 true scaffold_5: 43092470-43099052 Setaria italica
Seita.5G404200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43092470-43094469 Setaria italica
Seita.5G404200 2.0kb downstream 2.0kb downstream 6583 true scaffold_5: 43094470-43101052 Setaria italica
Seita.5G404200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43099053-43101052 Setaria italica
Seita.5G404200 5.0kb upstream 5.0kb upstream 9583 true scaffold_5: 43089470-43099052 Setaria italica
Seita.5G404200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43089470-43094469 Setaria italica
Seita.5G404200 5.0kb downstream 5.0kb downstream 9583 true scaffold_5: 43094470-43104052 Setaria italica
Seita.5G404200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43099053-43104052 Setaria italica
Seita.5G404200 10.0kb upstream 10.0kb upstream 14583 true scaffold_5: 43084470-43099052 Setaria italica
Seita.5G404200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43084470-43094469 Setaria italica
Seita.5G404200 10.0kb downstream 10.0kb downstream 14583 true scaffold_5: 43094470-43109052 Setaria italica
Seita.5G404200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43099053-43109052 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185411 5267 Panicoideae View MSA
124574188 5269 Grass View MSA
122049852 5273 Angiosperm View MSA
121350958 5274 Embryophyte View MSA
123428746 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.451        
cufflinks 11.205        
cufflinks 12.051     High  
cufflinks 12.503     High  
cufflinks 9.901        
cufflinks 10.245        
cufflinks 8.12       Low
cufflinks 13.63     High  
cufflinks 9.896        
cufflinks 9.771        
cufflinks 10.705        
cufflinks 28.879     High High
cufflinks 12.812        
cufflinks 13.065        
cufflinks 16.302     High  
cufflinks 8.4       Low
cufflinks 13.461        
cufflinks 18.334     High High
cufflinks 10.93        
cufflinks 15.677     High  

0 Strain