Gene : Seita.5G405600 S. italica v2.2
Defline:  (1 of 1) PTHR12677:SF5 - TVP38/TMEM64 FAMILY MEMBRANE PROTEIN YDJX Genomic Order:  4056
Name:  ? Seita.5G405600 Secondary Identifier:  ? PAC:32683417
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G405600 0.5kb upstream 0.5kb upstream 4047 true scaffold_5: 43239023-43243069 Setaria italica
Seita.5G405600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43242570-43243069 Setaria italica
Seita.5G405600 0.5kb downstream 0.5kb downstream 4047 true scaffold_5: 43238523-43242569 Setaria italica
Seita.5G405600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43238523-43239022 Setaria italica
Seita.5G405600 1.0kb upstream 1.0kb upstream 4547 true scaffold_5: 43239023-43243569 Setaria italica
Seita.5G405600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43242570-43243569 Setaria italica
Seita.5G405600 1.0kb downstream 1.0kb downstream 4547 true scaffold_5: 43238023-43242569 Setaria italica
Seita.5G405600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43238023-43239022 Setaria italica
Seita.5G405600 2.0kb upstream 2.0kb upstream 5547 true scaffold_5: 43239023-43244569 Setaria italica
Seita.5G405600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43242570-43244569 Setaria italica
Seita.5G405600 2.0kb downstream 2.0kb downstream 5547 true scaffold_5: 43237023-43242569 Setaria italica
Seita.5G405600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43237023-43239022 Setaria italica
Seita.5G405600 5.0kb upstream 5.0kb upstream 8547 true scaffold_5: 43239023-43247569 Setaria italica
Seita.5G405600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43242570-43247569 Setaria italica
Seita.5G405600 5.0kb downstream 5.0kb downstream 8547 true scaffold_5: 43234023-43242569 Setaria italica
Seita.5G405600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43234023-43239022 Setaria italica
Seita.5G405600 10.0kb upstream 10.0kb upstream 13547 true scaffold_5: 43239023-43252569 Setaria italica
Seita.5G405600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43242570-43252569 Setaria italica
Seita.5G405600 10.0kb downstream 10.0kb downstream 13547 true scaffold_5: 43229023-43242569 Setaria italica
Seita.5G405600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43229023-43239022 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191381 5267 Panicoideae View MSA
124578712 5269 Grass View MSA
122045988 5273 Angiosperm View MSA
121348100 5274 Embryophyte View MSA
123428145 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.555        
cufflinks 6.469        
cufflinks 16.178     High  
cufflinks 11.64     High  
cufflinks 13.559     High  
cufflinks 6.823        
cufflinks 16.446     High  
cufflinks 19.788     High High
cufflinks 15.797     High  
cufflinks 3.187        
cufflinks 2.725       Low
cufflinks 2.38       Low
cufflinks 2.482       Low
cufflinks 23.004     High High
cufflinks 2.287       Low
cufflinks 16.995     High  
cufflinks 2.647       Low
cufflinks 5.612        
cufflinks 43.246     High High
cufflinks 2.79       Low

0 Strain