Gene : Seita.5G407900 S. italica v2.2
Defline:  (1 of 1) PTHR10593:SF36 - SERINE/THREONINE-PROTEIN KINASE RIO2 Genomic Order:  4079
Name:  ? Seita.5G407900 Secondary Identifier:  ? PAC:32681872
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G407900 0.5kb upstream 0.5kb upstream 4231 true scaffold_5: 43367630-43371860 Setaria italica
Seita.5G407900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43371361-43371860 Setaria italica
Seita.5G407900 0.5kb downstream 0.5kb downstream 4231 true scaffold_5: 43367130-43371360 Setaria italica
Seita.5G407900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43367130-43367629 Setaria italica
Seita.5G407900 1.0kb upstream 1.0kb upstream 4731 true scaffold_5: 43367630-43372360 Setaria italica
Seita.5G407900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43371361-43372360 Setaria italica
Seita.5G407900 1.0kb downstream 1.0kb downstream 4731 true scaffold_5: 43366630-43371360 Setaria italica
Seita.5G407900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43366630-43367629 Setaria italica
Seita.5G407900 2.0kb upstream 2.0kb upstream 5731 true scaffold_5: 43367630-43373360 Setaria italica
Seita.5G407900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43371361-43373360 Setaria italica
Seita.5G407900 2.0kb downstream 2.0kb downstream 5731 true scaffold_5: 43365630-43371360 Setaria italica
Seita.5G407900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43365630-43367629 Setaria italica
Seita.5G407900 5.0kb upstream 5.0kb upstream 8731 true scaffold_5: 43367630-43376360 Setaria italica
Seita.5G407900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43371361-43376360 Setaria italica
Seita.5G407900 5.0kb downstream 5.0kb downstream 8731 true scaffold_5: 43362630-43371360 Setaria italica
Seita.5G407900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43362630-43367629 Setaria italica
Seita.5G407900 10.0kb upstream 10.0kb upstream 13731 true scaffold_5: 43367630-43381360 Setaria italica
Seita.5G407900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43371361-43381360 Setaria italica
Seita.5G407900 10.0kb downstream 10.0kb downstream 13731 true scaffold_5: 43357630-43371360 Setaria italica
Seita.5G407900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43357630-43367629 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178455 5267 Panicoideae View MSA
124574834 5269 Grass View MSA
122045504 5273 Angiosperm View MSA
121346545 5274 Embryophyte View MSA
123428706 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.079     High High
cufflinks 10.719        
cufflinks 8.417        
cufflinks 6.123       Low
cufflinks 7.024       Low
cufflinks 11.916        
cufflinks 9.406        
cufflinks 10.556        
cufflinks 10.517        
cufflinks 5.283       Low
cufflinks 11.983        
cufflinks 12.695        
cufflinks 8.263        
cufflinks 10.927        
cufflinks 11.047        
cufflinks 13.076     High  
cufflinks 13.165        
cufflinks 15.415     High High
cufflinks 7.399       Low
cufflinks 11.091        

0 Strain