Gene : Seita.5G406800 S. italica v2.2
Defline:  (1 of 2) PTHR11208//PTHR11208:SF60 - RNA-BINDING PROTEIN RELATED Genomic Order:  4068
Name:  ? Seita.5G406800 Secondary Identifier:  ? PAC:32680937
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G406800 0.5kb upstream 0.5kb upstream 5135 true scaffold_5: 43291039-43296173 Setaria italica
Seita.5G406800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43291039-43291538 Setaria italica
Seita.5G406800 0.5kb downstream 0.5kb downstream 5135 true scaffold_5: 43291539-43296673 Setaria italica
Seita.5G406800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43296174-43296673 Setaria italica
Seita.5G406800 1.0kb upstream 1.0kb upstream 5635 true scaffold_5: 43290539-43296173 Setaria italica
Seita.5G406800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43290539-43291538 Setaria italica
Seita.5G406800 1.0kb downstream 1.0kb downstream 5635 true scaffold_5: 43291539-43297173 Setaria italica
Seita.5G406800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43296174-43297173 Setaria italica
Seita.5G406800 2.0kb upstream 2.0kb upstream 6635 true scaffold_5: 43289539-43296173 Setaria italica
Seita.5G406800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43289539-43291538 Setaria italica
Seita.5G406800 2.0kb downstream 2.0kb downstream 6635 true scaffold_5: 43291539-43298173 Setaria italica
Seita.5G406800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43296174-43298173 Setaria italica
Seita.5G406800 5.0kb upstream 5.0kb upstream 9635 true scaffold_5: 43286539-43296173 Setaria italica
Seita.5G406800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43286539-43291538 Setaria italica
Seita.5G406800 5.0kb downstream 5.0kb downstream 9635 true scaffold_5: 43291539-43301173 Setaria italica
Seita.5G406800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43296174-43301173 Setaria italica
Seita.5G406800 10.0kb upstream 10.0kb upstream 14635 true scaffold_5: 43281539-43296173 Setaria italica
Seita.5G406800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43281539-43291538 Setaria italica
Seita.5G406800 10.0kb downstream 10.0kb downstream 14635 true scaffold_5: 43291539-43306173 Setaria italica
Seita.5G406800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43296174-43306173 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191095 5267 Panicoideae View MSA
124571010 5269 Grass View MSA
122041974 5273 Angiosperm View MSA
121350686 5274 Embryophyte View MSA
123426021 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.821     High  
cufflinks 24.592     High  
cufflinks 22.458     High  
cufflinks 18.044     High Low
cufflinks 15.203     High Low
cufflinks 25.1     High  
cufflinks 32.852     High High
cufflinks 20.28     High  
cufflinks 15.588     High Low
cufflinks 24.405     High  
cufflinks 29.398     High  
cufflinks 23.2     High  
cufflinks 37.348     High High
cufflinks 25.189     High  
cufflinks 34.43     High High
cufflinks 29.908     High  
cufflinks 29.205     High  
cufflinks 15.847     High Low
cufflinks 18.899     High  
cufflinks 36.75     High High

0 Strain