Gene : Seita.5G407300 S. italica v2.2
Defline:  (1 of 7) PTHR11075 - PEPTIDE CHAIN RELEASE FACTOR Genomic Order:  4073
Name:  ? Seita.5G407300 Secondary Identifier:  ? PAC:32686280
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G407300 0.5kb upstream 0.5kb upstream 2905 true scaffold_5: 43322878-43325782 Setaria italica
Seita.5G407300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43325283-43325782 Setaria italica
Seita.5G407300 0.5kb downstream 0.5kb downstream 2905 true scaffold_5: 43322378-43325282 Setaria italica
Seita.5G407300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43322378-43322877 Setaria italica
Seita.5G407300 1.0kb upstream 1.0kb upstream 3405 true scaffold_5: 43322878-43326282 Setaria italica
Seita.5G407300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43325283-43326282 Setaria italica
Seita.5G407300 1.0kb downstream 1.0kb downstream 3405 true scaffold_5: 43321878-43325282 Setaria italica
Seita.5G407300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43321878-43322877 Setaria italica
Seita.5G407300 2.0kb upstream 2.0kb upstream 4405 true scaffold_5: 43322878-43327282 Setaria italica
Seita.5G407300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43325283-43327282 Setaria italica
Seita.5G407300 2.0kb downstream 2.0kb downstream 4405 true scaffold_5: 43320878-43325282 Setaria italica
Seita.5G407300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43320878-43322877 Setaria italica
Seita.5G407300 5.0kb upstream 5.0kb upstream 7405 true scaffold_5: 43322878-43330282 Setaria italica
Seita.5G407300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43325283-43330282 Setaria italica
Seita.5G407300 5.0kb downstream 5.0kb downstream 7405 true scaffold_5: 43317878-43325282 Setaria italica
Seita.5G407300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43317878-43322877 Setaria italica
Seita.5G407300 10.0kb upstream 10.0kb upstream 12405 true scaffold_5: 43322878-43335282 Setaria italica
Seita.5G407300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43325283-43335282 Setaria italica
Seita.5G407300 10.0kb downstream 10.0kb downstream 12405 true scaffold_5: 43312878-43325282 Setaria italica
Seita.5G407300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43312878-43322877 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175329 5267 Panicoideae View MSA
124579637 5269 Grass View MSA
122041593 5273 Angiosperm View MSA
121346741 5274 Embryophyte View MSA
123380435 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.191        
cufflinks 1.215        
cufflinks 1.68        
cufflinks 2.051       High
cufflinks 1.855        
cufflinks 1.216        
cufflinks 1.713        
cufflinks 2.797       High
cufflinks 2.377       High
cufflinks 2.086       High
cufflinks 0.983        
cufflinks 0.937        
cufflinks 0.751       Low
cufflinks 1.738        
cufflinks 0.762       Low
cufflinks 1.519        
cufflinks 0.874       Low
cufflinks 0.97        
cufflinks 1.688        
cufflinks 0.838       Low

0 Strain