Gene : Seita.5G409300 S. italica v2.2
Defline:  (1 of 1) PTHR31791:SF8 - ZIP4-LIKE PROTEIN Genomic Order:  4093
Name:  ? Seita.5G409300 Secondary Identifier:  ? PAC:32685997
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G409300 0.5kb upstream 0.5kb upstream 3976 true scaffold_5: 43448798-43452773 Setaria italica
Seita.5G409300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43448798-43449297 Setaria italica
Seita.5G409300 0.5kb downstream 0.5kb downstream 3976 true scaffold_5: 43449298-43453273 Setaria italica
Seita.5G409300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43452774-43453273 Setaria italica
Seita.5G409300 1.0kb upstream 1.0kb upstream 4476 true scaffold_5: 43448298-43452773 Setaria italica
Seita.5G409300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43448298-43449297 Setaria italica
Seita.5G409300 1.0kb downstream 1.0kb downstream 4476 true scaffold_5: 43449298-43453773 Setaria italica
Seita.5G409300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43452774-43453773 Setaria italica
Seita.5G409300 2.0kb upstream 2.0kb upstream 5476 true scaffold_5: 43447298-43452773 Setaria italica
Seita.5G409300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43447298-43449297 Setaria italica
Seita.5G409300 2.0kb downstream 2.0kb downstream 5476 true scaffold_5: 43449298-43454773 Setaria italica
Seita.5G409300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43452774-43454773 Setaria italica
Seita.5G409300 5.0kb upstream 5.0kb upstream 8476 true scaffold_5: 43444298-43452773 Setaria italica
Seita.5G409300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43444298-43449297 Setaria italica
Seita.5G409300 5.0kb downstream 5.0kb downstream 8476 true scaffold_5: 43449298-43457773 Setaria italica
Seita.5G409300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43452774-43457773 Setaria italica
Seita.5G409300 10.0kb upstream 10.0kb upstream 13476 true scaffold_5: 43439298-43452773 Setaria italica
Seita.5G409300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43439298-43449297 Setaria italica
Seita.5G409300 10.0kb downstream 10.0kb downstream 13476 true scaffold_5: 43449298-43462773 Setaria italica
Seita.5G409300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43452774-43462773 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186527 5267 Panicoideae View MSA
124580484 5269 Grass View MSA
122044011 5273 Angiosperm View MSA
121345716 5274 Embryophyte View MSA
123425188 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.397        
cufflinks 0.722       High
cufflinks 0.053     Low  
cufflinks 0.036     Low Low
cufflinks 0.041     Low Low
cufflinks 0.499        
cufflinks 0.142        
cufflinks 0.304        
cufflinks 0.075     Low  
cufflinks 0.405        
cufflinks 0.7       High
cufflinks 0.358        
cufflinks 0.272        
cufflinks 0.022     Low Low
cufflinks 0.546       High
cufflinks 0.052     Low  
cufflinks 0.294        
cufflinks 0.035     Low Low
cufflinks 0.027     Low Low
cufflinks 0.445        

0 Strain