Gene : Seita.5G409400 S. italica v2.2
Defline:  (1 of 6) 3.2.1.52 - Beta-N-acetylhexosaminidase / N-acetyl-beta-glucosaminidase Genomic Order:  4094
Name:  ? Seita.5G409400 Secondary Identifier:  ? PAC:32681180
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6902 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G409400 0.5kb upstream 0.5kb upstream 6045 true scaffold_5: 43452919-43458963 Setaria italica
Seita.5G409400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43458464-43458963 Setaria italica
Seita.5G409400 0.5kb downstream 0.5kb downstream 6045 true scaffold_5: 43452419-43458463 Setaria italica
Seita.5G409400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43452419-43452918 Setaria italica
Seita.5G409400 1.0kb upstream 1.0kb upstream 6545 true scaffold_5: 43452919-43459463 Setaria italica
Seita.5G409400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43458464-43459463 Setaria italica
Seita.5G409400 1.0kb downstream 1.0kb downstream 6545 true scaffold_5: 43451919-43458463 Setaria italica
Seita.5G409400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43451919-43452918 Setaria italica
Seita.5G409400 2.0kb upstream 2.0kb upstream 7545 true scaffold_5: 43452919-43460463 Setaria italica
Seita.5G409400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43458464-43460463 Setaria italica
Seita.5G409400 2.0kb downstream 2.0kb downstream 7545 true scaffold_5: 43450919-43458463 Setaria italica
Seita.5G409400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43450919-43452918 Setaria italica
Seita.5G409400 5.0kb upstream 5.0kb upstream 10545 true scaffold_5: 43452919-43463463 Setaria italica
Seita.5G409400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43458464-43463463 Setaria italica
Seita.5G409400 5.0kb downstream 5.0kb downstream 10545 true scaffold_5: 43447919-43458463 Setaria italica
Seita.5G409400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43447919-43452918 Setaria italica
Seita.5G409400 10.0kb upstream 10.0kb upstream 15545 true scaffold_5: 43452919-43468463 Setaria italica
Seita.5G409400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43458464-43468463 Setaria italica
Seita.5G409400 10.0kb downstream 10.0kb downstream 15545 true scaffold_5: 43442919-43458463 Setaria italica
Seita.5G409400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43442919-43452918 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179982 5267 Panicoideae View MSA
124571085 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low  
cufflinks 5.57       High
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 3.743       High
cufflinks 0.105     Low  
cufflinks 0.088     Low  
cufflinks 0.091     Low  
cufflinks 0.108     Low  
cufflinks 0.064     Low  
cufflinks 0.161        
cufflinks 0.693        
cufflinks 0.002     Low Low
cufflinks 0.817       High
cufflinks 0.006     Low Low
cufflinks 0.166        
cufflinks 0.01     Low  
cufflinks 0.003     Low Low
cufflinks 0.502        

0 Strain