Gene : Seita.5G413700 S. italica v2.2
Genomic Order:  4137 Name:  ? Seita.5G413700
Secondary Identifier:  ? PAC:32680715
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G413700 0.5kb upstream 0.5kb upstream 4137 true scaffold_5: 43693853-43697989 Setaria italica
Seita.5G413700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43693853-43694352 Setaria italica
Seita.5G413700 0.5kb downstream 0.5kb downstream 4137 true scaffold_5: 43694353-43698489 Setaria italica
Seita.5G413700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43697990-43698489 Setaria italica
Seita.5G413700 1.0kb upstream 1.0kb upstream 4637 true scaffold_5: 43693353-43697989 Setaria italica
Seita.5G413700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43693353-43694352 Setaria italica
Seita.5G413700 1.0kb downstream 1.0kb downstream 4637 true scaffold_5: 43694353-43698989 Setaria italica
Seita.5G413700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43697990-43698989 Setaria italica
Seita.5G413700 2.0kb upstream 2.0kb upstream 5637 true scaffold_5: 43692353-43697989 Setaria italica
Seita.5G413700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43692353-43694352 Setaria italica
Seita.5G413700 2.0kb downstream 2.0kb downstream 5637 true scaffold_5: 43694353-43699989 Setaria italica
Seita.5G413700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43697990-43699989 Setaria italica
Seita.5G413700 5.0kb upstream 5.0kb upstream 8637 true scaffold_5: 43689353-43697989 Setaria italica
Seita.5G413700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43689353-43694352 Setaria italica
Seita.5G413700 5.0kb downstream 5.0kb downstream 8637 true scaffold_5: 43694353-43702989 Setaria italica
Seita.5G413700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43697990-43702989 Setaria italica
Seita.5G413700 10.0kb upstream 10.0kb upstream 13637 true scaffold_5: 43684353-43697989 Setaria italica
Seita.5G413700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43684353-43694352 Setaria italica
Seita.5G413700 10.0kb downstream 10.0kb downstream 13637 true scaffold_5: 43694353-43707989 Setaria italica
Seita.5G413700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43697990-43707989 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177813 5267 Panicoideae View MSA
124574847 5269 Grass View MSA
122045769 5273 Angiosperm View MSA
121344734 5274 Embryophyte View MSA
123380092 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.206       High
cufflinks 3.974       High
cufflinks 2.733        
cufflinks 2.355        
cufflinks 2.29       Low
cufflinks 3.842       High
cufflinks 2.429        
cufflinks 2.703        
cufflinks 2.594        
cufflinks 1.515       Low
cufflinks 3.878       High
cufflinks 3.286        
cufflinks 3.322        
cufflinks 2.596        
cufflinks 3.422        
cufflinks 2.847        
cufflinks 3.267        
cufflinks 3.507        
cufflinks 2.722        
cufflinks 3.408        

0 Strain