Gene : Seita.5G411900 S. italica v2.2
Defline:  (1 of 1) PTHR13077:SF6 - 15 KDA SELENOPROTEIN Genomic Order:  4119
Name:  ? Seita.5G411900 Secondary Identifier:  ? PAC:32681465
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G411900 0.5kb upstream 0.5kb upstream 3428 true scaffold_5: 43580104-43583531 Setaria italica
Seita.5G411900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43580104-43580603 Setaria italica
Seita.5G411900 0.5kb downstream 0.5kb downstream 3428 true scaffold_5: 43580604-43584031 Setaria italica
Seita.5G411900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43583532-43584031 Setaria italica
Seita.5G411900 1.0kb upstream 1.0kb upstream 3928 true scaffold_5: 43579604-43583531 Setaria italica
Seita.5G411900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43579604-43580603 Setaria italica
Seita.5G411900 1.0kb downstream 1.0kb downstream 3928 true scaffold_5: 43580604-43584531 Setaria italica
Seita.5G411900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43583532-43584531 Setaria italica
Seita.5G411900 2.0kb upstream 2.0kb upstream 4928 true scaffold_5: 43578604-43583531 Setaria italica
Seita.5G411900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43578604-43580603 Setaria italica
Seita.5G411900 2.0kb downstream 2.0kb downstream 4928 true scaffold_5: 43580604-43585531 Setaria italica
Seita.5G411900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43583532-43585531 Setaria italica
Seita.5G411900 5.0kb upstream 5.0kb upstream 7928 true scaffold_5: 43575604-43583531 Setaria italica
Seita.5G411900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43575604-43580603 Setaria italica
Seita.5G411900 5.0kb downstream 5.0kb downstream 7928 true scaffold_5: 43580604-43588531 Setaria italica
Seita.5G411900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43583532-43588531 Setaria italica
Seita.5G411900 10.0kb upstream 10.0kb upstream 12928 true scaffold_5: 43570604-43583531 Setaria italica
Seita.5G411900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43570604-43580603 Setaria italica
Seita.5G411900 10.0kb downstream 10.0kb downstream 12928 true scaffold_5: 43580604-43593531 Setaria italica
Seita.5G411900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43583532-43593531 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181164 5267 Panicoideae View MSA
124580731 5269 Grass View MSA
122044015 5273 Angiosperm View MSA
121346057 5274 Embryophyte View MSA
123424520 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.033        
cufflinks 16.488     High High
cufflinks 7.964       Low
cufflinks 10.262        
cufflinks 8.124       Low
cufflinks 15.53     High High
cufflinks 9.687        
cufflinks 13.221        
cufflinks 9.804        
cufflinks 10.764        
cufflinks 8.984        
cufflinks 14.515     High  
cufflinks 13.438     High  
cufflinks 10.836        
cufflinks 13.133        
cufflinks 7.179       Low
cufflinks 16.684     High High
cufflinks 5.704       Low
cufflinks 10.559        
cufflinks 16.069     High High

0 Strain