Gene : Seita.5G411600 S. italica v2.2
Defline:  (1 of 3) PTHR11771//PTHR11771:SF54 - LIPOXYGENASE Genomic Order:  4116
Name:  ? Seita.5G411600 Secondary Identifier:  ? PAC:32685971
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G411600 0.5kb upstream 0.5kb upstream 3892 true scaffold_5: 43553995-43557886 Setaria italica
Seita.5G411600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43557387-43557886 Setaria italica
Seita.5G411600 0.5kb downstream 0.5kb downstream 3892 true scaffold_5: 43553495-43557386 Setaria italica
Seita.5G411600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43553495-43553994 Setaria italica
Seita.5G411600 1.0kb upstream 1.0kb upstream 4392 true scaffold_5: 43553995-43558386 Setaria italica
Seita.5G411600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43557387-43558386 Setaria italica
Seita.5G411600 1.0kb downstream 1.0kb downstream 4392 true scaffold_5: 43552995-43557386 Setaria italica
Seita.5G411600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43552995-43553994 Setaria italica
Seita.5G411600 2.0kb upstream 2.0kb upstream 5392 true scaffold_5: 43553995-43559386 Setaria italica
Seita.5G411600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43557387-43559386 Setaria italica
Seita.5G411600 2.0kb downstream 2.0kb downstream 5392 true scaffold_5: 43551995-43557386 Setaria italica
Seita.5G411600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43551995-43553994 Setaria italica
Seita.5G411600 5.0kb upstream 5.0kb upstream 8392 true scaffold_5: 43553995-43562386 Setaria italica
Seita.5G411600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43557387-43562386 Setaria italica
Seita.5G411600 5.0kb downstream 5.0kb downstream 8392 true scaffold_5: 43548995-43557386 Setaria italica
Seita.5G411600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43548995-43553994 Setaria italica
Seita.5G411600 10.0kb upstream 10.0kb upstream 13392 true scaffold_5: 43553995-43567386 Setaria italica
Seita.5G411600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43557387-43567386 Setaria italica
Seita.5G411600 10.0kb downstream 10.0kb downstream 13392 true scaffold_5: 43543995-43557386 Setaria italica
Seita.5G411600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43543995-43553994 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191001 5267 Panicoideae View MSA
124585684 5269 Grass View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.093       High
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.005     Low Low
cufflinks 0.073     Low  
cufflinks 0.006     Low Low
cufflinks 3.068       High
cufflinks 25.926     High High
cufflinks 0.16        
cufflinks 0.822        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  
cufflinks 0.035     Low  
cufflinks 0.2        
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.379        

0 Strain