Gene : Seita.5G414500 S. italica v2.2
Defline:  (1 of 31) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  4145
Name:  ? Seita.5G414500 Secondary Identifier:  ? PAC:32682724
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G414500 0.5kb upstream 0.5kb upstream 5541 true scaffold_5: 43728336-43733876 Setaria italica
Seita.5G414500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43728336-43728835 Setaria italica
Seita.5G414500 0.5kb downstream 0.5kb downstream 5541 true scaffold_5: 43728836-43734376 Setaria italica
Seita.5G414500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43733877-43734376 Setaria italica
Seita.5G414500 1.0kb upstream 1.0kb upstream 6041 true scaffold_5: 43727836-43733876 Setaria italica
Seita.5G414500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43727836-43728835 Setaria italica
Seita.5G414500 1.0kb downstream 1.0kb downstream 6041 true scaffold_5: 43728836-43734876 Setaria italica
Seita.5G414500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43733877-43734876 Setaria italica
Seita.5G414500 2.0kb upstream 2.0kb upstream 7041 true scaffold_5: 43726836-43733876 Setaria italica
Seita.5G414500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43726836-43728835 Setaria italica
Seita.5G414500 2.0kb downstream 2.0kb downstream 7041 true scaffold_5: 43728836-43735876 Setaria italica
Seita.5G414500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43733877-43735876 Setaria italica
Seita.5G414500 5.0kb upstream 5.0kb upstream 10041 true scaffold_5: 43723836-43733876 Setaria italica
Seita.5G414500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43723836-43728835 Setaria italica
Seita.5G414500 5.0kb downstream 5.0kb downstream 10041 true scaffold_5: 43728836-43738876 Setaria italica
Seita.5G414500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43733877-43738876 Setaria italica
Seita.5G414500 10.0kb upstream 10.0kb upstream 15041 true scaffold_5: 43718836-43733876 Setaria italica
Seita.5G414500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43718836-43728835 Setaria italica
Seita.5G414500 10.0kb downstream 10.0kb downstream 15041 true scaffold_5: 43728836-43743876 Setaria italica
Seita.5G414500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43733877-43743876 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192964 5267 Panicoideae View MSA
124575899 5269 Grass View MSA
122045505 5273 Angiosperm View MSA
121310455 5274 Embryophyte View MSA
123347933 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.155        
cufflinks 3.587       High
cufflinks 1.891        
cufflinks 0.992       Low
cufflinks 1.445        
cufflinks 3.142        
cufflinks 1.964        
cufflinks 2.28        
cufflinks 2.671        
cufflinks 1.739        
cufflinks 3.012        
cufflinks 2.657        
cufflinks 1.489        
cufflinks 1.895        
cufflinks 3.44       High
cufflinks 1.429        
cufflinks 3.296       High
cufflinks 1.407        
cufflinks 0.941       Low
cufflinks 3.668       High

0 Strain