Gene : Seita.5G415600 S. italica v2.2
Defline:  (1 of 1) PTHR13343:SF18 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  4156
Name:  ? Seita.5G415600 Secondary Identifier:  ? PAC:32681269
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G415600 0.5kb upstream 0.5kb upstream 6142 true scaffold_5: 43826631-43832772 Setaria italica
Seita.5G415600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43832273-43832772 Setaria italica
Seita.5G415600 0.5kb downstream 0.5kb downstream 6142 true scaffold_5: 43826131-43832272 Setaria italica
Seita.5G415600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43826131-43826630 Setaria italica
Seita.5G415600 1.0kb upstream 1.0kb upstream 6642 true scaffold_5: 43826631-43833272 Setaria italica
Seita.5G415600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43832273-43833272 Setaria italica
Seita.5G415600 1.0kb downstream 1.0kb downstream 6642 true scaffold_5: 43825631-43832272 Setaria italica
Seita.5G415600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43825631-43826630 Setaria italica
Seita.5G415600 2.0kb upstream 2.0kb upstream 7642 true scaffold_5: 43826631-43834272 Setaria italica
Seita.5G415600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43832273-43834272 Setaria italica
Seita.5G415600 2.0kb downstream 2.0kb downstream 7642 true scaffold_5: 43824631-43832272 Setaria italica
Seita.5G415600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43824631-43826630 Setaria italica
Seita.5G415600 5.0kb upstream 5.0kb upstream 10642 true scaffold_5: 43826631-43837272 Setaria italica
Seita.5G415600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43832273-43837272 Setaria italica
Seita.5G415600 5.0kb downstream 5.0kb downstream 10642 true scaffold_5: 43821631-43832272 Setaria italica
Seita.5G415600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43821631-43826630 Setaria italica
Seita.5G415600 10.0kb upstream 10.0kb upstream 15642 true scaffold_5: 43826631-43842272 Setaria italica
Seita.5G415600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43832273-43842272 Setaria italica
Seita.5G415600 10.0kb downstream 10.0kb downstream 15642 true scaffold_5: 43816631-43832272 Setaria italica
Seita.5G415600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43816631-43826630 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178316 5267 Panicoideae View MSA
124568249 5269 Grass View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.346        
cufflinks 1.854        
cufflinks 2.047        
cufflinks 2.544        
cufflinks 2.459        
cufflinks 1.699        
cufflinks 3.475       High
cufflinks 2.452        
cufflinks 2.05        
cufflinks 1.222       Low
cufflinks 1.528        
cufflinks 1.705        
cufflinks 1.789        
cufflinks 1.452       Low
cufflinks 1.649        
cufflinks 3.531       High
cufflinks 1.717        
cufflinks 1.531        
cufflinks 2.74       High
cufflinks 1.945        

0 Strain