Gene : Seita.5G420400 S. italica v2.2
Defline:  (1 of 1) KOG2459 - GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis Genomic Order:  4204
Name:  ? Seita.5G420400 Secondary Identifier:  ? PAC:32684050
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G420400 0.5kb upstream 0.5kb upstream 5261 true scaffold_5: 44258421-44263681 Setaria italica
Seita.5G420400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44258421-44258920 Setaria italica
Seita.5G420400 0.5kb downstream 0.5kb downstream 5261 true scaffold_5: 44258921-44264181 Setaria italica
Seita.5G420400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44263682-44264181 Setaria italica
Seita.5G420400 1.0kb upstream 1.0kb upstream 5761 true scaffold_5: 44257921-44263681 Setaria italica
Seita.5G420400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44257921-44258920 Setaria italica
Seita.5G420400 1.0kb downstream 1.0kb downstream 5761 true scaffold_5: 44258921-44264681 Setaria italica
Seita.5G420400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44263682-44264681 Setaria italica
Seita.5G420400 2.0kb upstream 2.0kb upstream 6761 true scaffold_5: 44256921-44263681 Setaria italica
Seita.5G420400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44256921-44258920 Setaria italica
Seita.5G420400 2.0kb downstream 2.0kb downstream 6761 true scaffold_5: 44258921-44265681 Setaria italica
Seita.5G420400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44263682-44265681 Setaria italica
Seita.5G420400 5.0kb upstream 5.0kb upstream 9761 true scaffold_5: 44253921-44263681 Setaria italica
Seita.5G420400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44253921-44258920 Setaria italica
Seita.5G420400 5.0kb downstream 5.0kb downstream 9761 true scaffold_5: 44258921-44268681 Setaria italica
Seita.5G420400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44263682-44268681 Setaria italica
Seita.5G420400 10.0kb upstream 10.0kb upstream 14761 true scaffold_5: 44248921-44263681 Setaria italica
Seita.5G420400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44248921-44258920 Setaria italica
Seita.5G420400 10.0kb downstream 10.0kb downstream 14761 true scaffold_5: 44258921-44273681 Setaria italica
Seita.5G420400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44263682-44273681 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182062 5267 Panicoideae View MSA
124573332 5269 Grass View MSA
122046562 5273 Angiosperm View MSA
121348153 5274 Embryophyte View MSA
123426160 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.322     High High
cufflinks 18.654     High High
cufflinks 12.356     High  
cufflinks 13.759     High  
cufflinks 12.876     High  
cufflinks 16.522     High  
cufflinks 11.664        
cufflinks 13.012        
cufflinks 11.279        
cufflinks 15.588     High  
cufflinks 17.335     High  
cufflinks 15.92     High  
cufflinks 13.346        
cufflinks 7.965       Low
cufflinks 14.414     High  
cufflinks 13.21     High  
cufflinks 16.104     High  
cufflinks 18.917     High High
cufflinks 8.505       Low
cufflinks 15.486     High  

0 Strain