Gene : Seita.5G420600 S. italica v2.2
Defline:  (1 of 2) PTHR13282:SF6 - PROTEIN FAM32A Genomic Order:  4206
Name:  ? Seita.5G420600 Secondary Identifier:  ? PAC:32680925
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G420600 0.5kb upstream 0.5kb upstream 2867 true scaffold_5: 44269484-44272350 Setaria italica
Seita.5G420600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44269484-44269983 Setaria italica
Seita.5G420600 0.5kb downstream 0.5kb downstream 2867 true scaffold_5: 44269984-44272850 Setaria italica
Seita.5G420600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44272351-44272850 Setaria italica
Seita.5G420600 1.0kb upstream 1.0kb upstream 3367 true scaffold_5: 44268984-44272350 Setaria italica
Seita.5G420600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44268984-44269983 Setaria italica
Seita.5G420600 1.0kb downstream 1.0kb downstream 3367 true scaffold_5: 44269984-44273350 Setaria italica
Seita.5G420600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44272351-44273350 Setaria italica
Seita.5G420600 2.0kb upstream 2.0kb upstream 4367 true scaffold_5: 44267984-44272350 Setaria italica
Seita.5G420600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44267984-44269983 Setaria italica
Seita.5G420600 2.0kb downstream 2.0kb downstream 4367 true scaffold_5: 44269984-44274350 Setaria italica
Seita.5G420600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44272351-44274350 Setaria italica
Seita.5G420600 5.0kb upstream 5.0kb upstream 7367 true scaffold_5: 44264984-44272350 Setaria italica
Seita.5G420600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44264984-44269983 Setaria italica
Seita.5G420600 5.0kb downstream 5.0kb downstream 7367 true scaffold_5: 44269984-44277350 Setaria italica
Seita.5G420600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44272351-44277350 Setaria italica
Seita.5G420600 10.0kb upstream 10.0kb upstream 12367 true scaffold_5: 44259984-44272350 Setaria italica
Seita.5G420600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44259984-44269983 Setaria italica
Seita.5G420600 10.0kb downstream 10.0kb downstream 12367 true scaffold_5: 44269984-44282350 Setaria italica
Seita.5G420600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44272351-44282350 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191741 5267 Panicoideae View MSA
124573208 5269 Grass View MSA
122045426 5273 Angiosperm View MSA
121347666 5274 Embryophyte View MSA
123426193 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.101     High  
cufflinks 28.648     High  
cufflinks 17.957     High  
cufflinks 20.624     High  
cufflinks 18.025     High  
cufflinks 30.546     High High
cufflinks 19.743     High  
cufflinks 29.304     High High
cufflinks 24.705     High  
cufflinks 23.653     High  
cufflinks 17.656     High  
cufflinks 29.18     High High
cufflinks 26.375     High  
cufflinks 17.236     High  
cufflinks 29.813     High High
cufflinks 14.136     High Low
cufflinks 34.832     High High
cufflinks 15.062     High Low
cufflinks 19.294     High  
cufflinks 26.805     High  

0 Strain