Gene : Seita.5G420300 S. italica v2.2
Defline:  (1 of 1) PTHR10666//PTHR10666:SF115 - UBIQUITIN Genomic Order:  4203
Name:  ? Seita.5G420300 Secondary Identifier:  ? PAC:32681518
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G420300 0.5kb upstream 0.5kb upstream 1818 true scaffold_5: 44253939-44255756 Setaria italica
Seita.5G420300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44253939-44254438 Setaria italica
Seita.5G420300 0.5kb downstream 0.5kb downstream 1818 true scaffold_5: 44254439-44256256 Setaria italica
Seita.5G420300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44255757-44256256 Setaria italica
Seita.5G420300 1.0kb upstream 1.0kb upstream 2318 true scaffold_5: 44253439-44255756 Setaria italica
Seita.5G420300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44253439-44254438 Setaria italica
Seita.5G420300 1.0kb downstream 1.0kb downstream 2318 true scaffold_5: 44254439-44256756 Setaria italica
Seita.5G420300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44255757-44256756 Setaria italica
Seita.5G420300 2.0kb upstream 2.0kb upstream 3318 true scaffold_5: 44252439-44255756 Setaria italica
Seita.5G420300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44252439-44254438 Setaria italica
Seita.5G420300 2.0kb downstream 2.0kb downstream 3318 true scaffold_5: 44254439-44257756 Setaria italica
Seita.5G420300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44255757-44257756 Setaria italica
Seita.5G420300 5.0kb upstream 5.0kb upstream 6318 true scaffold_5: 44249439-44255756 Setaria italica
Seita.5G420300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44249439-44254438 Setaria italica
Seita.5G420300 5.0kb downstream 5.0kb downstream 6318 true scaffold_5: 44254439-44260756 Setaria italica
Seita.5G420300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44255757-44260756 Setaria italica
Seita.5G420300 10.0kb upstream 10.0kb upstream 11318 true scaffold_5: 44244439-44255756 Setaria italica
Seita.5G420300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44244439-44254438 Setaria italica
Seita.5G420300 10.0kb downstream 10.0kb downstream 11318 true scaffold_5: 44254439-44265756 Setaria italica
Seita.5G420300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44255757-44265756 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198289 5267 Panicoideae View MSA
124586625 5269 Grass View MSA
122043992 5273 Angiosperm View MSA
121310223 5274 Embryophyte View MSA
123347771 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.393     High  
cufflinks 3.606       Low
cufflinks 10.864     High  
cufflinks 26.536     High  
cufflinks 46.816     High  
cufflinks 4.484       Low
cufflinks 20.277     High  
cufflinks 18.759     High  
cufflinks 32.409     High  
cufflinks 25.223     High  
cufflinks 16.977     High  
cufflinks 45.896     High  
cufflinks 70.395     High High
cufflinks 0.89       Low
cufflinks 12.442        
cufflinks 22.762     High  
cufflinks 31.103     High  
cufflinks 37.549     High  
cufflinks 6.452        
cufflinks 15.126     High  

0 Strain