Gene : Seita.5G421800 S. italica v2.2
Defline:  (1 of 1) PTHR11203:SF2 - INTEGRATOR COMPLEX SUBUNIT 9 Genomic Order:  4218
Name:  ? Seita.5G421800 Secondary Identifier:  ? PAC:32686118
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G421800 0.5kb upstream 0.5kb upstream 6470 true scaffold_5: 44354341-44360810 Setaria italica
Seita.5G421800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44354341-44354840 Setaria italica
Seita.5G421800 0.5kb downstream 0.5kb downstream 6470 true scaffold_5: 44354841-44361310 Setaria italica
Seita.5G421800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44360811-44361310 Setaria italica
Seita.5G421800 1.0kb upstream 1.0kb upstream 6970 true scaffold_5: 44353841-44360810 Setaria italica
Seita.5G421800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44353841-44354840 Setaria italica
Seita.5G421800 1.0kb downstream 1.0kb downstream 6970 true scaffold_5: 44354841-44361810 Setaria italica
Seita.5G421800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44360811-44361810 Setaria italica
Seita.5G421800 2.0kb upstream 2.0kb upstream 7970 true scaffold_5: 44352841-44360810 Setaria italica
Seita.5G421800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44352841-44354840 Setaria italica
Seita.5G421800 2.0kb downstream 2.0kb downstream 7970 true scaffold_5: 44354841-44362810 Setaria italica
Seita.5G421800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44360811-44362810 Setaria italica
Seita.5G421800 5.0kb upstream 5.0kb upstream 10970 true scaffold_5: 44349841-44360810 Setaria italica
Seita.5G421800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44349841-44354840 Setaria italica
Seita.5G421800 5.0kb downstream 5.0kb downstream 10970 true scaffold_5: 44354841-44365810 Setaria italica
Seita.5G421800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44360811-44365810 Setaria italica
Seita.5G421800 10.0kb upstream 10.0kb upstream 15970 true scaffold_5: 44344841-44360810 Setaria italica
Seita.5G421800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44344841-44354840 Setaria italica
Seita.5G421800 10.0kb downstream 10.0kb downstream 15970 true scaffold_5: 44354841-44370810 Setaria italica
Seita.5G421800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44360811-44370810 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188864 5267 Panicoideae View MSA
124587867 5269 Grass View MSA
122041612 5273 Angiosperm View MSA
121343816 5274 Embryophyte View MSA
123379922 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.428        
cufflinks 0.691       Low
cufflinks 1.413        
cufflinks 1.181        
cufflinks 1.117        
cufflinks 0.663       Low
cufflinks 1.378        
cufflinks 0.841       Low
cufflinks 1.013        
cufflinks 1.346        
cufflinks 1.485        
cufflinks 3.924       High
cufflinks 1.886        
cufflinks 2.186        
cufflinks 1.361        
cufflinks 1.862        
cufflinks 1.764        
cufflinks 7.305       High
cufflinks 1.414        
cufflinks 1.464        

0 Strain