Gene : Seita.5G420900 S. italica v2.2
Defline:  (1 of 3) PTHR24012:SF415 - F12A21.10-RELATED Genomic Order:  4209
Name:  ? Seita.5G420900 Secondary Identifier:  ? PAC:32684773
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G420900 0.5kb upstream 0.5kb upstream 4235 true scaffold_5: 44294063-44298297 Setaria italica
Seita.5G420900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44294063-44294562 Setaria italica
Seita.5G420900 0.5kb downstream 0.5kb downstream 4235 true scaffold_5: 44294563-44298797 Setaria italica
Seita.5G420900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44298298-44298797 Setaria italica
Seita.5G420900 1.0kb upstream 1.0kb upstream 4735 true scaffold_5: 44293563-44298297 Setaria italica
Seita.5G420900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44293563-44294562 Setaria italica
Seita.5G420900 1.0kb downstream 1.0kb downstream 4735 true scaffold_5: 44294563-44299297 Setaria italica
Seita.5G420900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44298298-44299297 Setaria italica
Seita.5G420900 2.0kb upstream 2.0kb upstream 5735 true scaffold_5: 44292563-44298297 Setaria italica
Seita.5G420900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44292563-44294562 Setaria italica
Seita.5G420900 2.0kb downstream 2.0kb downstream 5735 true scaffold_5: 44294563-44300297 Setaria italica
Seita.5G420900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44298298-44300297 Setaria italica
Seita.5G420900 5.0kb upstream 5.0kb upstream 8735 true scaffold_5: 44289563-44298297 Setaria italica
Seita.5G420900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44289563-44294562 Setaria italica
Seita.5G420900 5.0kb downstream 5.0kb downstream 8735 true scaffold_5: 44294563-44303297 Setaria italica
Seita.5G420900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44298298-44303297 Setaria italica
Seita.5G420900 10.0kb upstream 10.0kb upstream 13735 true scaffold_5: 44284563-44298297 Setaria italica
Seita.5G420900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44284563-44294562 Setaria italica
Seita.5G420900 10.0kb downstream 10.0kb downstream 13735 true scaffold_5: 44294563-44308297 Setaria italica
Seita.5G420900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44298298-44308297 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187950 5267 Panicoideae View MSA
124576674 5269 Grass View MSA
122044254 5273 Angiosperm View MSA
121348969 5274 Embryophyte View MSA
123381105 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.092     Low High
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.024     Low  
cufflinks 0.095     Low High
cufflinks 0.006     Low Low
cufflinks 0.045     Low  
cufflinks 0.08     Low  
cufflinks 0.009     Low Low
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.123       High
cufflinks 0.046     Low  
cufflinks 0.04     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.064     Low  

0 Strain