Gene : Seita.5G423500 S. italica v2.2
Defline:  (1 of 1) KOG3117 - Protein involved in rRNA processing Genomic Order:  4235
Name:  ? Seita.5G423500 Secondary Identifier:  ? PAC:32682084
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G423500 0.5kb upstream 0.5kb upstream 3963 true scaffold_5: 44469840-44473802 Setaria italica
Seita.5G423500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44473303-44473802 Setaria italica
Seita.5G423500 0.5kb downstream 0.5kb downstream 3963 true scaffold_5: 44469340-44473302 Setaria italica
Seita.5G423500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44469340-44469839 Setaria italica
Seita.5G423500 1.0kb upstream 1.0kb upstream 4463 true scaffold_5: 44469840-44474302 Setaria italica
Seita.5G423500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44473303-44474302 Setaria italica
Seita.5G423500 1.0kb downstream 1.0kb downstream 4463 true scaffold_5: 44468840-44473302 Setaria italica
Seita.5G423500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44468840-44469839 Setaria italica
Seita.5G423500 2.0kb upstream 2.0kb upstream 5463 true scaffold_5: 44469840-44475302 Setaria italica
Seita.5G423500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44473303-44475302 Setaria italica
Seita.5G423500 2.0kb downstream 2.0kb downstream 5463 true scaffold_5: 44467840-44473302 Setaria italica
Seita.5G423500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44467840-44469839 Setaria italica
Seita.5G423500 5.0kb upstream 5.0kb upstream 8463 true scaffold_5: 44469840-44478302 Setaria italica
Seita.5G423500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44473303-44478302 Setaria italica
Seita.5G423500 5.0kb downstream 5.0kb downstream 8463 true scaffold_5: 44464840-44473302 Setaria italica
Seita.5G423500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44464840-44469839 Setaria italica
Seita.5G423500 10.0kb upstream 10.0kb upstream 13463 true scaffold_5: 44469840-44483302 Setaria italica
Seita.5G423500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44473303-44483302 Setaria italica
Seita.5G423500 10.0kb downstream 10.0kb downstream 13463 true scaffold_5: 44459840-44473302 Setaria italica
Seita.5G423500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44459840-44469839 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189285 5267 Panicoideae View MSA
124569087 5269 Grass View MSA
122047581 5273 Angiosperm View MSA
121345702 5274 Embryophyte View MSA
123380258 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.853        
cufflinks 6.548       High
cufflinks 3.485        
cufflinks 2.724       Low
cufflinks 3.344        
cufflinks 8.167       High
cufflinks 2.881       Low
cufflinks 5.671        
cufflinks 5.231        
cufflinks 2.643       Low
cufflinks 4.702        
cufflinks 5.407        
cufflinks 2.993        
cufflinks 5.11        
cufflinks 6.545       High
cufflinks 2.445       Low
cufflinks 7.716       High
cufflinks 4.104        
cufflinks 2.973        
cufflinks 5.69        

0 Strain