Gene : Seita.5G423800 S. italica v2.2
Defline:  (1 of 53) PF00005//PF00664 - ABC transporter (ABC_tran) // ABC transporter transmembrane region (ABC_membrane) Genomic Order:  4238
Name:  ? Seita.5G423800 Secondary Identifier:  ? PAC:32681784
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G423800 0.5kb upstream 0.5kb upstream 5581 true scaffold_5: 44485044-44490624 Setaria italica
Seita.5G423800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 44490125-44490624 Setaria italica
Seita.5G423800 0.5kb downstream 0.5kb downstream 5581 true scaffold_5: 44484544-44490124 Setaria italica
Seita.5G423800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 44484544-44485043 Setaria italica
Seita.5G423800 1.0kb upstream 1.0kb upstream 6081 true scaffold_5: 44485044-44491124 Setaria italica
Seita.5G423800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 44490125-44491124 Setaria italica
Seita.5G423800 1.0kb downstream 1.0kb downstream 6081 true scaffold_5: 44484044-44490124 Setaria italica
Seita.5G423800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 44484044-44485043 Setaria italica
Seita.5G423800 2.0kb upstream 2.0kb upstream 7081 true scaffold_5: 44485044-44492124 Setaria italica
Seita.5G423800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 44490125-44492124 Setaria italica
Seita.5G423800 2.0kb downstream 2.0kb downstream 7081 true scaffold_5: 44483044-44490124 Setaria italica
Seita.5G423800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 44483044-44485043 Setaria italica
Seita.5G423800 5.0kb upstream 5.0kb upstream 10081 true scaffold_5: 44485044-44495124 Setaria italica
Seita.5G423800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 44490125-44495124 Setaria italica
Seita.5G423800 5.0kb downstream 5.0kb downstream 10081 true scaffold_5: 44480044-44490124 Setaria italica
Seita.5G423800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 44480044-44485043 Setaria italica
Seita.5G423800 10.0kb upstream 10.0kb upstream 15081 true scaffold_5: 44485044-44500124 Setaria italica
Seita.5G423800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 44490125-44500124 Setaria italica
Seita.5G423800 10.0kb downstream 10.0kb downstream 15081 true scaffold_5: 44475044-44490124 Setaria italica
Seita.5G423800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 44475044-44485043 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195478 5267 Panicoideae View MSA
124571849 5269 Grass View MSA
122046260 5273 Angiosperm View MSA
123429075 5275 Viridiplantae View MSA
121346944 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.23        
cufflinks 7.553        
cufflinks 39.545     High High
cufflinks 36.201     High High
cufflinks 22.428     High  
cufflinks 7.343        
cufflinks 19.352     High  
cufflinks 17.095     High  
cufflinks 17.777     High  
cufflinks 5.368       Low
cufflinks 8.523        
cufflinks 7.362        
cufflinks 7.269        
cufflinks 48.664     High High
cufflinks 6.535        
cufflinks 23.041     High  
cufflinks 6.569        
cufflinks 29.513     High  
cufflinks 57.547     High High
cufflinks 5.931       Low

0 Strain