Gene : Seita.5G357600 S. italica v2.2
Genomic Order:  3576 Name:  ? Seita.5G357600
Secondary Identifier:  ? PAC:32686409
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G357600 0.5kb upstream 0.5kb upstream 3955 true scaffold_5: 39754574-39758528 Setaria italica
Seita.5G357600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39758029-39758528 Setaria italica
Seita.5G357600 0.5kb downstream 0.5kb downstream 3955 true scaffold_5: 39754074-39758028 Setaria italica
Seita.5G357600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39754074-39754573 Setaria italica
Seita.5G357600 1.0kb upstream 1.0kb upstream 4455 true scaffold_5: 39754574-39759028 Setaria italica
Seita.5G357600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39758029-39759028 Setaria italica
Seita.5G357600 1.0kb downstream 1.0kb downstream 4455 true scaffold_5: 39753574-39758028 Setaria italica
Seita.5G357600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39753574-39754573 Setaria italica
Seita.5G357600 2.0kb upstream 2.0kb upstream 5455 true scaffold_5: 39754574-39760028 Setaria italica
Seita.5G357600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39758029-39760028 Setaria italica
Seita.5G357600 2.0kb downstream 2.0kb downstream 5455 true scaffold_5: 39752574-39758028 Setaria italica
Seita.5G357600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39752574-39754573 Setaria italica
Seita.5G357600 5.0kb upstream 5.0kb upstream 8455 true scaffold_5: 39754574-39763028 Setaria italica
Seita.5G357600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39758029-39763028 Setaria italica
Seita.5G357600 5.0kb downstream 5.0kb downstream 8455 true scaffold_5: 39749574-39758028 Setaria italica
Seita.5G357600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39749574-39754573 Setaria italica
Seita.5G357600 10.0kb upstream 10.0kb upstream 13455 true scaffold_5: 39754574-39768028 Setaria italica
Seita.5G357600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39758029-39768028 Setaria italica
Seita.5G357600 10.0kb downstream 10.0kb downstream 13455 true scaffold_5: 39744574-39758028 Setaria italica
Seita.5G357600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39744574-39754573 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178888 5267 Panicoideae View MSA
124586410 5269 Grass View MSA
122048276 5273 Angiosperm View MSA
121310915 5274 Embryophyte View MSA
123348289 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.402     High  
cufflinks 34.169     High Low
cufflinks 111.003     High  
cufflinks 125.269     High High
cufflinks 90.134     High  
cufflinks 36.184     High Low
cufflinks 72.088     High  
cufflinks 57.904     High  
cufflinks 47.181     High Low
cufflinks 44.257     High Low
cufflinks 57.422     High  
cufflinks 115.771     High  
cufflinks 106.712     High  
cufflinks 85.222     High  
cufflinks 75.875     High  
cufflinks 71.529     High  
cufflinks 69.593     High  
cufflinks 249.005     High High
cufflinks 120.12     High  
cufflinks 87.721     High  

0 Strain