Gene : Seita.5G359800 S. italica v2.2
Defline:  (1 of 42) PF04525 - LURP-one-related (LOR) Genomic Order:  3598
Name:  ? Seita.5G359800 Secondary Identifier:  ? PAC:32683762
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G359800 0.5kb upstream 0.5kb upstream 2586 true scaffold_5: 39902707-39905292 Setaria italica
Seita.5G359800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 39902707-39903206 Setaria italica
Seita.5G359800 0.5kb downstream 0.5kb downstream 2586 true scaffold_5: 39903207-39905792 Setaria italica
Seita.5G359800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 39905293-39905792 Setaria italica
Seita.5G359800 1.0kb upstream 1.0kb upstream 3086 true scaffold_5: 39902207-39905292 Setaria italica
Seita.5G359800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 39902207-39903206 Setaria italica
Seita.5G359800 1.0kb downstream 1.0kb downstream 3086 true scaffold_5: 39903207-39906292 Setaria italica
Seita.5G359800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 39905293-39906292 Setaria italica
Seita.5G359800 2.0kb upstream 2.0kb upstream 4086 true scaffold_5: 39901207-39905292 Setaria italica
Seita.5G359800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 39901207-39903206 Setaria italica
Seita.5G359800 2.0kb downstream 2.0kb downstream 4086 true scaffold_5: 39903207-39907292 Setaria italica
Seita.5G359800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 39905293-39907292 Setaria italica
Seita.5G359800 5.0kb upstream 5.0kb upstream 7086 true scaffold_5: 39898207-39905292 Setaria italica
Seita.5G359800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 39898207-39903206 Setaria italica
Seita.5G359800 5.0kb downstream 5.0kb downstream 7086 true scaffold_5: 39903207-39910292 Setaria italica
Seita.5G359800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 39905293-39910292 Setaria italica
Seita.5G359800 10.0kb upstream 10.0kb upstream 12086 true scaffold_5: 39893207-39905292 Setaria italica
Seita.5G359800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 39893207-39903206 Setaria italica
Seita.5G359800 10.0kb downstream 10.0kb downstream 12086 true scaffold_5: 39903207-39915292 Setaria italica
Seita.5G359800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 39905293-39915292 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185212 5267 Panicoideae View MSA
124580707 5269 Grass View MSA
122048433 5273 Angiosperm View MSA
121310971 5274 Embryophyte View MSA
123348336 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.629        
cufflinks 0.668        
cufflinks 0.948        
cufflinks 1.156        
cufflinks 0.387       Low
cufflinks 0.716        
cufflinks 0.982        
cufflinks 1.117        
cufflinks 0.31       Low
cufflinks 6.379       High
cufflinks 2.221       High
cufflinks 0.49        
cufflinks 2.603       High
cufflinks 1.581        
cufflinks 0.541        
cufflinks 0.739        
cufflinks 0.609        
cufflinks 0.71        
cufflinks 1.563        
cufflinks 0.387       Low

0 Strain