Gene : Seita.5G364800 S. italica v2.2
Defline:  (1 of 1) PTHR32444:SF6 - D-MANNOSE BINDING LECTIN PROTEIN WITH APPLE-LIKE CARBOHYDRATE-BINDING DOMAIN Genomic Order:  3648
Name:  ? Seita.5G364800 Secondary Identifier:  ? PAC:32680934
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G364800 0.5kb upstream 0.5kb upstream 3212 true scaffold_5: 40320390-40323601 Setaria italica
Seita.5G364800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 40323102-40323601 Setaria italica
Seita.5G364800 0.5kb downstream 0.5kb downstream 3212 true scaffold_5: 40319890-40323101 Setaria italica
Seita.5G364800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 40319890-40320389 Setaria italica
Seita.5G364800 1.0kb upstream 1.0kb upstream 3712 true scaffold_5: 40320390-40324101 Setaria italica
Seita.5G364800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 40323102-40324101 Setaria italica
Seita.5G364800 1.0kb downstream 1.0kb downstream 3712 true scaffold_5: 40319390-40323101 Setaria italica
Seita.5G364800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 40319390-40320389 Setaria italica
Seita.5G364800 2.0kb upstream 2.0kb upstream 4712 true scaffold_5: 40320390-40325101 Setaria italica
Seita.5G364800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 40323102-40325101 Setaria italica
Seita.5G364800 2.0kb downstream 2.0kb downstream 4712 true scaffold_5: 40318390-40323101 Setaria italica
Seita.5G364800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 40318390-40320389 Setaria italica
Seita.5G364800 5.0kb upstream 5.0kb upstream 7712 true scaffold_5: 40320390-40328101 Setaria italica
Seita.5G364800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 40323102-40328101 Setaria italica
Seita.5G364800 5.0kb downstream 5.0kb downstream 7712 true scaffold_5: 40315390-40323101 Setaria italica
Seita.5G364800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 40315390-40320389 Setaria italica
Seita.5G364800 10.0kb upstream 10.0kb upstream 12712 true scaffold_5: 40320390-40333101 Setaria italica
Seita.5G364800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 40323102-40333101 Setaria italica
Seita.5G364800 10.0kb downstream 10.0kb downstream 12712 true scaffold_5: 40310390-40323101 Setaria italica
Seita.5G364800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 40310390-40320389 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029223 5273 Angiosperm View MSA
122183942 5267 Panicoideae View MSA
124572419 5269 Grass View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  

0 Strain