Gene : Seita.5G367400 S. italica v2.2
Defline:  (1 of 14) PF05097 - Protein of unknown function (DUF688) (DUF688) Genomic Order:  3674
Name:  ? Seita.5G367400 Secondary Identifier:  ? PAC:32681874
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G367400 0.5kb upstream 0.5kb upstream 1676 true scaffold_5: 40470387-40472062 Setaria italica
Seita.5G367400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 40471563-40472062 Setaria italica
Seita.5G367400 0.5kb downstream 0.5kb downstream 1676 true scaffold_5: 40469887-40471562 Setaria italica
Seita.5G367400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 40469887-40470386 Setaria italica
Seita.5G367400 1.0kb upstream 1.0kb upstream 2176 true scaffold_5: 40470387-40472562 Setaria italica
Seita.5G367400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 40471563-40472562 Setaria italica
Seita.5G367400 1.0kb downstream 1.0kb downstream 2176 true scaffold_5: 40469387-40471562 Setaria italica
Seita.5G367400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 40469387-40470386 Setaria italica
Seita.5G367400 2.0kb upstream 2.0kb upstream 3176 true scaffold_5: 40470387-40473562 Setaria italica
Seita.5G367400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 40471563-40473562 Setaria italica
Seita.5G367400 2.0kb downstream 2.0kb downstream 3176 true scaffold_5: 40468387-40471562 Setaria italica
Seita.5G367400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 40468387-40470386 Setaria italica
Seita.5G367400 5.0kb upstream 5.0kb upstream 6176 true scaffold_5: 40470387-40476562 Setaria italica
Seita.5G367400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 40471563-40476562 Setaria italica
Seita.5G367400 5.0kb downstream 5.0kb downstream 6176 true scaffold_5: 40465387-40471562 Setaria italica
Seita.5G367400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 40465387-40470386 Setaria italica
Seita.5G367400 10.0kb upstream 10.0kb upstream 11176 true scaffold_5: 40470387-40481562 Setaria italica
Seita.5G367400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 40471563-40481562 Setaria italica
Seita.5G367400 10.0kb downstream 10.0kb downstream 11176 true scaffold_5: 40460387-40471562 Setaria italica
Seita.5G367400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 40460387-40470386 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029269 5273 Angiosperm View MSA
122197772 5267 Panicoideae View MSA
124570527 5269 Grass View MSA
121298624 5274 Embryophyte View MSA
123336584 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.214        
cufflinks 0.511        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.125        
cufflinks 0.239        
cufflinks 0.575       High
cufflinks 0.813       High
cufflinks 0.726       High
cufflinks 1.031       High
cufflinks 0.142     Low  
cufflinks 0.216        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.086     Low  
cufflinks 0.02     Low Low
cufflinks 0.015     Low Low
cufflinks 0.085     Low  
cufflinks 0.014     Low Low
cufflinks 0.082     Low  
cufflinks 0.024     Low Low
cufflinks 0.029     Low Low

0 Strain