Gene : Seita.5G368200 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  3682
Name:  ? Seita.5G368200 Secondary Identifier:  ? PAC:32686208
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G368200 0.5kb upstream 0.5kb upstream 9117 true scaffold_5: 40504041-40513157 Setaria italica
Seita.5G368200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 40504041-40504540 Setaria italica
Seita.5G368200 0.5kb downstream 0.5kb downstream 9117 true scaffold_5: 40504541-40513657 Setaria italica
Seita.5G368200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 40513158-40513657 Setaria italica
Seita.5G368200 1.0kb upstream 1.0kb upstream 9617 true scaffold_5: 40503541-40513157 Setaria italica
Seita.5G368200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 40503541-40504540 Setaria italica
Seita.5G368200 1.0kb downstream 1.0kb downstream 9617 true scaffold_5: 40504541-40514157 Setaria italica
Seita.5G368200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 40513158-40514157 Setaria italica
Seita.5G368200 2.0kb upstream 2.0kb upstream 10617 true scaffold_5: 40502541-40513157 Setaria italica
Seita.5G368200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 40502541-40504540 Setaria italica
Seita.5G368200 2.0kb downstream 2.0kb downstream 10617 true scaffold_5: 40504541-40515157 Setaria italica
Seita.5G368200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 40513158-40515157 Setaria italica
Seita.5G368200 5.0kb upstream 5.0kb upstream 13617 true scaffold_5: 40499541-40513157 Setaria italica
Seita.5G368200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 40499541-40504540 Setaria italica
Seita.5G368200 5.0kb downstream 5.0kb downstream 13617 true scaffold_5: 40504541-40518157 Setaria italica
Seita.5G368200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 40513158-40518157 Setaria italica
Seita.5G368200 10.0kb upstream 10.0kb upstream 18617 true scaffold_5: 40494541-40513157 Setaria italica
Seita.5G368200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 40494541-40504540 Setaria italica
Seita.5G368200 10.0kb downstream 10.0kb downstream 18617 true scaffold_5: 40504541-40523157 Setaria italica
Seita.5G368200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 40513158-40523157 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195946 5267 Panicoideae View MSA
124571564 5269 Grass View MSA
122051004 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121312244 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.003        
cufflinks 0.526        
cufflinks 0.664        
cufflinks 0.247       Low
cufflinks 0.422        
cufflinks 0.684        
cufflinks 0.46        
cufflinks 0.438        
cufflinks 0.254        
cufflinks 3.371        
cufflinks 2.962        
cufflinks 6.726       High
cufflinks 6.066       High
cufflinks 2.961        
cufflinks 9.601       High
cufflinks 0.06     Low Low
cufflinks 6.832       High
cufflinks 0.136       Low
cufflinks 0.944        
cufflinks 9.39       High

0 Strain