Gene : Seita.5G371000 S. italica v2.2
Defline:  (1 of 50) PF00612 - IQ calmodulin-binding motif (IQ) Genomic Order:  3710
Name:  ? Seita.5G371000 Secondary Identifier:  ? PAC:32686149
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G371000 0.5kb upstream 0.5kb upstream 4485 true scaffold_5: 40744709-40749193 Setaria italica
Seita.5G371000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 40748694-40749193 Setaria italica
Seita.5G371000 0.5kb downstream 0.5kb downstream 4485 true scaffold_5: 40744209-40748693 Setaria italica
Seita.5G371000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 40744209-40744708 Setaria italica
Seita.5G371000 1.0kb upstream 1.0kb upstream 4985 true scaffold_5: 40744709-40749693 Setaria italica
Seita.5G371000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 40748694-40749693 Setaria italica
Seita.5G371000 1.0kb downstream 1.0kb downstream 4985 true scaffold_5: 40743709-40748693 Setaria italica
Seita.5G371000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 40743709-40744708 Setaria italica
Seita.5G371000 2.0kb upstream 2.0kb upstream 5985 true scaffold_5: 40744709-40750693 Setaria italica
Seita.5G371000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 40748694-40750693 Setaria italica
Seita.5G371000 2.0kb downstream 2.0kb downstream 5985 true scaffold_5: 40742709-40748693 Setaria italica
Seita.5G371000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 40742709-40744708 Setaria italica
Seita.5G371000 5.0kb upstream 5.0kb upstream 8985 true scaffold_5: 40744709-40753693 Setaria italica
Seita.5G371000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 40748694-40753693 Setaria italica
Seita.5G371000 5.0kb downstream 5.0kb downstream 8985 true scaffold_5: 40739709-40748693 Setaria italica
Seita.5G371000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 40739709-40744708 Setaria italica
Seita.5G371000 10.0kb upstream 10.0kb upstream 13985 true scaffold_5: 40744709-40758693 Setaria italica
Seita.5G371000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 40748694-40758693 Setaria italica
Seita.5G371000 10.0kb downstream 10.0kb downstream 13985 true scaffold_5: 40734709-40748693 Setaria italica
Seita.5G371000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 40734709-40744708 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186729 5267 Panicoideae View MSA
124573705 5269 Grass View MSA
122044352 5273 Angiosperm View MSA
121351537 5274 Embryophyte View MSA
123382213 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.602        
cufflinks 17.154     High High
cufflinks 4.403       Low
cufflinks 4.899        
cufflinks 6.763        
cufflinks 20.527     High High
cufflinks 11.909       High
cufflinks 8.073        
cufflinks 9.941        
cufflinks 9.54        
cufflinks 8.661        
cufflinks 5.096        
cufflinks 7.296        
cufflinks 4.364       Low
cufflinks 7.098        
cufflinks 8.973        
cufflinks 5.869        
cufflinks 8.665        
cufflinks 3.715       Low
cufflinks 5.627        

0 Strain