Gene : Seita.5G378500 S. italica v2.2
Defline:  (1 of 2) PTHR22883:SF92 - PROTEIN S-ACYLTRANSFERASE 16-RELATED Genomic Order:  3785
Name:  ? Seita.5G378500 Secondary Identifier:  ? PAC:32685511
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G378500 0.5kb upstream 0.5kb upstream 4006 true scaffold_5: 41217677-41221682 Setaria italica
Seita.5G378500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41221183-41221682 Setaria italica
Seita.5G378500 0.5kb downstream 0.5kb downstream 4006 true scaffold_5: 41217177-41221182 Setaria italica
Seita.5G378500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41217177-41217676 Setaria italica
Seita.5G378500 1.0kb upstream 1.0kb upstream 4506 true scaffold_5: 41217677-41222182 Setaria italica
Seita.5G378500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41221183-41222182 Setaria italica
Seita.5G378500 1.0kb downstream 1.0kb downstream 4506 true scaffold_5: 41216677-41221182 Setaria italica
Seita.5G378500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41216677-41217676 Setaria italica
Seita.5G378500 2.0kb upstream 2.0kb upstream 5506 true scaffold_5: 41217677-41223182 Setaria italica
Seita.5G378500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41221183-41223182 Setaria italica
Seita.5G378500 2.0kb downstream 2.0kb downstream 5506 true scaffold_5: 41215677-41221182 Setaria italica
Seita.5G378500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41215677-41217676 Setaria italica
Seita.5G378500 5.0kb upstream 5.0kb upstream 8506 true scaffold_5: 41217677-41226182 Setaria italica
Seita.5G378500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41221183-41226182 Setaria italica
Seita.5G378500 5.0kb downstream 5.0kb downstream 8506 true scaffold_5: 41212677-41221182 Setaria italica
Seita.5G378500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41212677-41217676 Setaria italica
Seita.5G378500 10.0kb upstream 10.0kb upstream 13506 true scaffold_5: 41217677-41231182 Setaria italica
Seita.5G378500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41221183-41231182 Setaria italica
Seita.5G378500 10.0kb downstream 10.0kb downstream 13506 true scaffold_5: 41207677-41221182 Setaria italica
Seita.5G378500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41207677-41217676 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187410 5267 Panicoideae View MSA
124583112 5269 Grass View MSA
122049119 5273 Angiosperm View MSA
121349855 5274 Embryophyte View MSA
123428148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.792        
cufflinks 9.054       High
cufflinks 0.582       Low
cufflinks 0.557       Low
cufflinks 0.641       Low
cufflinks 9.115       High
cufflinks 5.004        
cufflinks 5.433        
cufflinks 3.42        
cufflinks 6.004        
cufflinks 5.269        
cufflinks 4.043        
cufflinks 6.993        
cufflinks 1.836        
cufflinks 5.784        
cufflinks 2.49        
cufflinks 4.937        
cufflinks 2.557        
cufflinks 1.524        
cufflinks 5.514        

0 Strain