Gene : Seita.5G383700 S. italica v2.2
Defline:  (1 of 1) PTHR10556:SF37 - 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE 2 Genomic Order:  3837
Name:  ? Seita.5G383700 Secondary Identifier:  ? PAC:32682790
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G383700 0.5kb upstream 0.5kb upstream 3797 true scaffold_5: 41609822-41613618 Setaria italica
Seita.5G383700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41609822-41610321 Setaria italica
Seita.5G383700 0.5kb downstream 0.5kb downstream 3797 true scaffold_5: 41610322-41614118 Setaria italica
Seita.5G383700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41613619-41614118 Setaria italica
Seita.5G383700 1.0kb upstream 1.0kb upstream 4297 true scaffold_5: 41609322-41613618 Setaria italica
Seita.5G383700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41609322-41610321 Setaria italica
Seita.5G383700 1.0kb downstream 1.0kb downstream 4297 true scaffold_5: 41610322-41614618 Setaria italica
Seita.5G383700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41613619-41614618 Setaria italica
Seita.5G383700 2.0kb upstream 2.0kb upstream 5297 true scaffold_5: 41608322-41613618 Setaria italica
Seita.5G383700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41608322-41610321 Setaria italica
Seita.5G383700 2.0kb downstream 2.0kb downstream 5297 true scaffold_5: 41610322-41615618 Setaria italica
Seita.5G383700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41613619-41615618 Setaria italica
Seita.5G383700 5.0kb upstream 5.0kb upstream 8297 true scaffold_5: 41605322-41613618 Setaria italica
Seita.5G383700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41605322-41610321 Setaria italica
Seita.5G383700 5.0kb downstream 5.0kb downstream 8297 true scaffold_5: 41610322-41618618 Setaria italica
Seita.5G383700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41613619-41618618 Setaria italica
Seita.5G383700 10.0kb upstream 10.0kb upstream 13297 true scaffold_5: 41600322-41613618 Setaria italica
Seita.5G383700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41600322-41610321 Setaria italica
Seita.5G383700 10.0kb downstream 10.0kb downstream 13297 true scaffold_5: 41610322-41623618 Setaria italica
Seita.5G383700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41613619-41623618 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175346 5267 Panicoideae View MSA
124577414 5269 Grass View MSA
122045974 5273 Angiosperm View MSA
121350714 5274 Embryophyte View MSA
123428210 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.969        
cufflinks 0.939       Low
cufflinks 1.52        
cufflinks 1.046        
cufflinks 1.039        
cufflinks 1.067        
cufflinks 1.237        
cufflinks 1.724        
cufflinks 0.903       Low
cufflinks 6.332       High
cufflinks 1.268        
cufflinks 1.582        
cufflinks 3.9       High
cufflinks 1.924        
cufflinks 1.283        
cufflinks 2.578        
cufflinks 1.987        
cufflinks 2.007        
cufflinks 0.996        
cufflinks 1.718        

0 Strain