Gene : Seita.5G387200 S. italica v2.2
Defline:  (1 of 2) PTHR22950:SF256 - AUXIN TRANSPORTER PROTEIN 1-RELATED Genomic Order:  3872
Name:  ? Seita.5G387200 Secondary Identifier:  ? PAC:32683631
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G387200 0.5kb upstream 0.5kb upstream 8019 true scaffold_5: 41871888-41879906 Setaria italica
Seita.5G387200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41871888-41872387 Setaria italica
Seita.5G387200 0.5kb downstream 0.5kb downstream 8019 true scaffold_5: 41872388-41880406 Setaria italica
Seita.5G387200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41879907-41880406 Setaria italica
Seita.5G387200 1.0kb upstream 1.0kb upstream 8519 true scaffold_5: 41871388-41879906 Setaria italica
Seita.5G387200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41871388-41872387 Setaria italica
Seita.5G387200 1.0kb downstream 1.0kb downstream 8519 true scaffold_5: 41872388-41880906 Setaria italica
Seita.5G387200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41879907-41880906 Setaria italica
Seita.5G387200 2.0kb upstream 2.0kb upstream 9519 true scaffold_5: 41870388-41879906 Setaria italica
Seita.5G387200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41870388-41872387 Setaria italica
Seita.5G387200 2.0kb downstream 2.0kb downstream 9519 true scaffold_5: 41872388-41881906 Setaria italica
Seita.5G387200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41879907-41881906 Setaria italica
Seita.5G387200 5.0kb upstream 5.0kb upstream 12519 true scaffold_5: 41867388-41879906 Setaria italica
Seita.5G387200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41867388-41872387 Setaria italica
Seita.5G387200 5.0kb downstream 5.0kb downstream 12519 true scaffold_5: 41872388-41884906 Setaria italica
Seita.5G387200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41879907-41884906 Setaria italica
Seita.5G387200 10.0kb upstream 10.0kb upstream 17519 true scaffold_5: 41862388-41879906 Setaria italica
Seita.5G387200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41862388-41872387 Setaria italica
Seita.5G387200 10.0kb downstream 10.0kb downstream 17519 true scaffold_5: 41872388-41889906 Setaria italica
Seita.5G387200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41879907-41889906 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176678 5267 Panicoideae View MSA
124568434 5269 Grass View MSA
122045744 5273 Angiosperm View MSA
121347395 5274 Embryophyte View MSA
123427582 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.426     High  
cufflinks 7.468        
cufflinks 1.077       Low
cufflinks 0.849       Low
cufflinks 1.617       Low
cufflinks 9.448        
cufflinks 7.912        
cufflinks 4.328        
cufflinks 4.81        
cufflinks 19.383     High High
cufflinks 18.949     High High
cufflinks 5.614        
cufflinks 10.987        
cufflinks 2.007       Low
cufflinks 14.119     High  
cufflinks 10.576        
cufflinks 8.451        
cufflinks 3.668        
cufflinks 1.48       Low
cufflinks 14.197        

0 Strain