Gene : Seita.5G385200 S. italica v2.2
Defline:  (1 of 3) PTHR24006:SF428 - CORONATINE-INSENSITIVE PROTEIN 1 Genomic Order:  3852
Name:  ? Seita.5G385200 Secondary Identifier:  ? PAC:32682591
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G385200 0.5kb upstream 0.5kb upstream 4095 true scaffold_5: 41690894-41694988 Setaria italica
Seita.5G385200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41690894-41691393 Setaria italica
Seita.5G385200 0.5kb downstream 0.5kb downstream 4095 true scaffold_5: 41691394-41695488 Setaria italica
Seita.5G385200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41694989-41695488 Setaria italica
Seita.5G385200 1.0kb upstream 1.0kb upstream 4595 true scaffold_5: 41690394-41694988 Setaria italica
Seita.5G385200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41690394-41691393 Setaria italica
Seita.5G385200 1.0kb downstream 1.0kb downstream 4595 true scaffold_5: 41691394-41695988 Setaria italica
Seita.5G385200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41694989-41695988 Setaria italica
Seita.5G385200 2.0kb upstream 2.0kb upstream 5595 true scaffold_5: 41689394-41694988 Setaria italica
Seita.5G385200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41689394-41691393 Setaria italica
Seita.5G385200 2.0kb downstream 2.0kb downstream 5595 true scaffold_5: 41691394-41696988 Setaria italica
Seita.5G385200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41694989-41696988 Setaria italica
Seita.5G385200 5.0kb upstream 5.0kb upstream 8595 true scaffold_5: 41686394-41694988 Setaria italica
Seita.5G385200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41686394-41691393 Setaria italica
Seita.5G385200 5.0kb downstream 5.0kb downstream 8595 true scaffold_5: 41691394-41699988 Setaria italica
Seita.5G385200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41694989-41699988 Setaria italica
Seita.5G385200 10.0kb upstream 10.0kb upstream 13595 true scaffold_5: 41681394-41694988 Setaria italica
Seita.5G385200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41681394-41691393 Setaria italica
Seita.5G385200 10.0kb downstream 10.0kb downstream 13595 true scaffold_5: 41691394-41704988 Setaria italica
Seita.5G385200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41694989-41704988 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177754 5267 Panicoideae View MSA
124572022 5269 Grass View MSA
122042626 5273 Angiosperm View MSA
121349676 5274 Embryophyte View MSA
123381396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 63.443     High  
cufflinks 70.193     High  
cufflinks 79.203     High High
cufflinks 64.716     High  
cufflinks 43.678     High  
cufflinks 67.151     High  
cufflinks 40.269     High  
cufflinks 36.084     High Low
cufflinks 21.396     High Low
cufflinks 40.643     High  
cufflinks 47.448     High  
cufflinks 60.064     High  
cufflinks 62.8     High  
cufflinks 56.403     High  
cufflinks 54.638     High  
cufflinks 47.164     High  
cufflinks 72.622     High High
cufflinks 35.032     High Low
cufflinks 58.723     High  
cufflinks 59.601     High  

0 Strain