Gene : Seita.5G388500 S. italica v2.2
Defline:  (1 of 1) PTHR15052:SF2 - GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 2 Genomic Order:  3885
Name:  ? Seita.5G388500 Secondary Identifier:  ? PAC:32685152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G388500 0.5kb upstream 0.5kb upstream 10919 true scaffold_5: 41948941-41959859 Setaria italica
Seita.5G388500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41959360-41959859 Setaria italica
Seita.5G388500 0.5kb downstream 0.5kb downstream 10919 true scaffold_5: 41948441-41959359 Setaria italica
Seita.5G388500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41948441-41948940 Setaria italica
Seita.5G388500 1.0kb upstream 1.0kb upstream 11419 true scaffold_5: 41948941-41960359 Setaria italica
Seita.5G388500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41959360-41960359 Setaria italica
Seita.5G388500 1.0kb downstream 1.0kb downstream 11419 true scaffold_5: 41947941-41959359 Setaria italica
Seita.5G388500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41947941-41948940 Setaria italica
Seita.5G388500 2.0kb upstream 2.0kb upstream 12419 true scaffold_5: 41948941-41961359 Setaria italica
Seita.5G388500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41959360-41961359 Setaria italica
Seita.5G388500 2.0kb downstream 2.0kb downstream 12419 true scaffold_5: 41946941-41959359 Setaria italica
Seita.5G388500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41946941-41948940 Setaria italica
Seita.5G388500 5.0kb upstream 5.0kb upstream 15419 true scaffold_5: 41948941-41964359 Setaria italica
Seita.5G388500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41959360-41964359 Setaria italica
Seita.5G388500 5.0kb downstream 5.0kb downstream 15419 true scaffold_5: 41943941-41959359 Setaria italica
Seita.5G388500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41943941-41948940 Setaria italica
Seita.5G388500 10.0kb upstream 10.0kb upstream 20419 true scaffold_5: 41948941-41969359 Setaria italica
Seita.5G388500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41959360-41969359 Setaria italica
Seita.5G388500 10.0kb downstream 10.0kb downstream 20419 true scaffold_5: 41938941-41959359 Setaria italica
Seita.5G388500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41938941-41948940 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026858 5273 Angiosperm View MSA
122198871 5267 Panicoideae View MSA
124586125 5269 Grass View MSA
121347438 5274 Embryophyte View MSA
123380552 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.367       High
cufflinks 1.714        
cufflinks 1.756        
cufflinks 1.154        
cufflinks 1.156        
cufflinks 1.99        
cufflinks 1.67        
cufflinks 1.242        
cufflinks 1.528        
cufflinks 0.96       Low
cufflinks 1.794        
cufflinks 1.216        
cufflinks 1.374        
cufflinks 2.132        
cufflinks 1.76        
cufflinks 2.555       High
cufflinks 1.497        
cufflinks 3.752       High
cufflinks 0.976       Low
cufflinks 1.381        

0 Strain