Gene : Seita.5G387800 S. italica v2.2
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  3878
Name:  ? Seita.5G387800 Secondary Identifier:  ? PAC:32681019
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica KDOSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G387800 0.5kb upstream 0.5kb upstream 5159 true scaffold_5: 41910808-41915966 Setaria italica
Seita.5G387800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 41915467-41915966 Setaria italica
Seita.5G387800 0.5kb downstream 0.5kb downstream 5159 true scaffold_5: 41910308-41915466 Setaria italica
Seita.5G387800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 41910308-41910807 Setaria italica
Seita.5G387800 1.0kb upstream 1.0kb upstream 5659 true scaffold_5: 41910808-41916466 Setaria italica
Seita.5G387800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 41915467-41916466 Setaria italica
Seita.5G387800 1.0kb downstream 1.0kb downstream 5659 true scaffold_5: 41909808-41915466 Setaria italica
Seita.5G387800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 41909808-41910807 Setaria italica
Seita.5G387800 2.0kb upstream 2.0kb upstream 6659 true scaffold_5: 41910808-41917466 Setaria italica
Seita.5G387800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 41915467-41917466 Setaria italica
Seita.5G387800 2.0kb downstream 2.0kb downstream 6659 true scaffold_5: 41908808-41915466 Setaria italica
Seita.5G387800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 41908808-41910807 Setaria italica
Seita.5G387800 5.0kb upstream 5.0kb upstream 9659 true scaffold_5: 41910808-41920466 Setaria italica
Seita.5G387800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 41915467-41920466 Setaria italica
Seita.5G387800 5.0kb downstream 5.0kb downstream 9659 true scaffold_5: 41905808-41915466 Setaria italica
Seita.5G387800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 41905808-41910807 Setaria italica
Seita.5G387800 10.0kb upstream 10.0kb upstream 14659 true scaffold_5: 41910808-41925466 Setaria italica
Seita.5G387800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 41915467-41925466 Setaria italica
Seita.5G387800 10.0kb downstream 10.0kb downstream 14659 true scaffold_5: 41900808-41915466 Setaria italica
Seita.5G387800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 41900808-41910807 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185332 5267 Panicoideae View MSA
124575901 5269 Grass View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.777       High
cufflinks 5.248        
cufflinks 5.029        
cufflinks 5.281        
cufflinks 4.004        
cufflinks 5.511       High
cufflinks 3.534        
cufflinks 4.837        
cufflinks 3.308        
cufflinks 6.386       High
cufflinks 5.234        
cufflinks 3.117       Low
cufflinks 3.825        
cufflinks 3.367        
cufflinks 3.329        
cufflinks 5.395        
cufflinks 3.598        
cufflinks 4.415        
cufflinks 2.655       Low
cufflinks 3.221       Low

0 Strain