Gene : Seita.5G394500 S. italica v2.2
Defline:  (1 of 1) PTHR10322:SF21 - DNA POLYMERASE ALPHA CATALYTIC SUBUNIT Genomic Order:  3945
Name:  ? Seita.5G394500 Secondary Identifier:  ? PAC:32686468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G394500 0.5kb upstream 0.5kb upstream 11152 true scaffold_5: 42375471-42386622 Setaria italica
Seita.5G394500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42386123-42386622 Setaria italica
Seita.5G394500 0.5kb downstream 0.5kb downstream 11152 true scaffold_5: 42374971-42386122 Setaria italica
Seita.5G394500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42374971-42375470 Setaria italica
Seita.5G394500 1.0kb upstream 1.0kb upstream 11652 true scaffold_5: 42375471-42387122 Setaria italica
Seita.5G394500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42386123-42387122 Setaria italica
Seita.5G394500 1.0kb downstream 1.0kb downstream 11652 true scaffold_5: 42374471-42386122 Setaria italica
Seita.5G394500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42374471-42375470 Setaria italica
Seita.5G394500 2.0kb upstream 2.0kb upstream 12652 true scaffold_5: 42375471-42388122 Setaria italica
Seita.5G394500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42386123-42388122 Setaria italica
Seita.5G394500 2.0kb downstream 2.0kb downstream 12652 true scaffold_5: 42373471-42386122 Setaria italica
Seita.5G394500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42373471-42375470 Setaria italica
Seita.5G394500 5.0kb upstream 5.0kb upstream 15652 true scaffold_5: 42375471-42391122 Setaria italica
Seita.5G394500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42386123-42391122 Setaria italica
Seita.5G394500 5.0kb downstream 5.0kb downstream 15652 true scaffold_5: 42370471-42386122 Setaria italica
Seita.5G394500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42370471-42375470 Setaria italica
Seita.5G394500 10.0kb upstream 10.0kb upstream 20652 true scaffold_5: 42375471-42396122 Setaria italica
Seita.5G394500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42386123-42396122 Setaria italica
Seita.5G394500 10.0kb downstream 10.0kb downstream 20652 true scaffold_5: 42365471-42386122 Setaria italica
Seita.5G394500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42365471-42375470 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194895 5267 Panicoideae View MSA
124575248 5269 Grass View MSA
122042985 5273 Angiosperm View MSA
121344859 5274 Embryophyte View MSA
123423980 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.588        
cufflinks 3.838        
cufflinks 0.059     Low Low
cufflinks 0.007     Low Low
cufflinks 0.028     Low Low
cufflinks 3.887        
cufflinks 2.265        
cufflinks 2.871        
cufflinks 1.808        
cufflinks 2.699        
cufflinks 3.213        
cufflinks 1.868        
cufflinks 1.473        
cufflinks 0.195        
cufflinks 3.027        
cufflinks 0.381        
cufflinks 2.357        
cufflinks 0.162        
cufflinks 0.01     Low Low
cufflinks 2.973        

0 Strain