Gene : Seita.5G393400 S. italica v2.2
Defline:  (1 of 1) PTHR12735:SF27 - BOLA-LIKE PROTEIN 2 Genomic Order:  3934
Name:  ? Seita.5G393400 Secondary Identifier:  ? PAC:32685768
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G393400 0.5kb upstream 0.5kb upstream 1934 true scaffold_5: 42289901-42291834 Setaria italica
Seita.5G393400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 42291335-42291834 Setaria italica
Seita.5G393400 0.5kb downstream 0.5kb downstream 1934 true scaffold_5: 42289401-42291334 Setaria italica
Seita.5G393400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 42289401-42289900 Setaria italica
Seita.5G393400 1.0kb upstream 1.0kb upstream 2434 true scaffold_5: 42289901-42292334 Setaria italica
Seita.5G393400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 42291335-42292334 Setaria italica
Seita.5G393400 1.0kb downstream 1.0kb downstream 2434 true scaffold_5: 42288901-42291334 Setaria italica
Seita.5G393400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 42288901-42289900 Setaria italica
Seita.5G393400 2.0kb upstream 2.0kb upstream 3434 true scaffold_5: 42289901-42293334 Setaria italica
Seita.5G393400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 42291335-42293334 Setaria italica
Seita.5G393400 2.0kb downstream 2.0kb downstream 3434 true scaffold_5: 42287901-42291334 Setaria italica
Seita.5G393400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 42287901-42289900 Setaria italica
Seita.5G393400 5.0kb upstream 5.0kb upstream 6434 true scaffold_5: 42289901-42296334 Setaria italica
Seita.5G393400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 42291335-42296334 Setaria italica
Seita.5G393400 5.0kb downstream 5.0kb downstream 6434 true scaffold_5: 42284901-42291334 Setaria italica
Seita.5G393400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 42284901-42289900 Setaria italica
Seita.5G393400 10.0kb upstream 10.0kb upstream 11434 true scaffold_5: 42289901-42301334 Setaria italica
Seita.5G393400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 42291335-42301334 Setaria italica
Seita.5G393400 10.0kb downstream 10.0kb downstream 11434 true scaffold_5: 42279901-42291334 Setaria italica
Seita.5G393400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 42279901-42289900 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026440 5273 Angiosperm View MSA
122184188 5267 Panicoideae View MSA
124572584 5269 Grass View MSA
121344740 5274 Embryophyte View MSA
123424571 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.032        
cufflinks 17.304     High  
cufflinks 13.997     High  
cufflinks 17.298     High  
cufflinks 8.653       Low
cufflinks 18.126     High  
cufflinks 10.777        
cufflinks 16.823     High  
cufflinks 6.141       Low
cufflinks 18.821     High  
cufflinks 12.576        
cufflinks 17.045     High  
cufflinks 20.468     High  
cufflinks 36.661     High High
cufflinks 21.3     High  
cufflinks 9.161       Low
cufflinks 24.891     High High
cufflinks 9.277       Low
cufflinks 17.32     High  
cufflinks 23.817     High High

0 Strain