Gene : Seita.5G468900 S. italica v2.2
Defline:  (1 of 1) PTHR14281:SF0 - KINETOCHORE PROTEIN SPC25 Genomic Order:  4689
Name:  ? Seita.5G468900 Secondary Identifier:  ? PAC:32686503
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G468900 0.5kb upstream 0.5kb upstream 3525 true scaffold_5: 47131872-47135396 Setaria italica
Seita.5G468900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 47134897-47135396 Setaria italica
Seita.5G468900 0.5kb downstream 0.5kb downstream 3525 true scaffold_5: 47131372-47134896 Setaria italica
Seita.5G468900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 47131372-47131871 Setaria italica
Seita.5G468900 1.0kb upstream 1.0kb upstream 4025 true scaffold_5: 47131872-47135896 Setaria italica
Seita.5G468900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 47134897-47135896 Setaria italica
Seita.5G468900 1.0kb downstream 1.0kb downstream 4025 true scaffold_5: 47130872-47134896 Setaria italica
Seita.5G468900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 47130872-47131871 Setaria italica
Seita.5G468900 2.0kb upstream 2.0kb upstream 5025 true scaffold_5: 47131872-47136896 Setaria italica
Seita.5G468900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 47134897-47136896 Setaria italica
Seita.5G468900 2.0kb downstream 2.0kb downstream 5025 true scaffold_5: 47129872-47134896 Setaria italica
Seita.5G468900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 47129872-47131871 Setaria italica
Seita.5G468900 5.0kb upstream 5.0kb upstream 8025 true scaffold_5: 47131872-47139896 Setaria italica
Seita.5G468900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 47134897-47139896 Setaria italica
Seita.5G468900 5.0kb downstream 5.0kb downstream 8025 true scaffold_5: 47126872-47134896 Setaria italica
Seita.5G468900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 47126872-47131871 Setaria italica
Seita.5G468900 10.0kb upstream 10.0kb upstream 13025 true scaffold_5: 47131872-47144896 Setaria italica
Seita.5G468900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 47134897-47144896 Setaria italica
Seita.5G468900 10.0kb downstream 10.0kb downstream 13025 true scaffold_5: 47121872-47134896 Setaria italica
Seita.5G468900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 47121872-47131871 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189282 5267 Panicoideae View MSA
124577788 5269 Grass View MSA
122047601 5273 Angiosperm View MSA
121348266 5274 Embryophyte View MSA
123424992 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.811        
cufflinks 1.314        
cufflinks 0.111       Low
cufflinks 0.092       Low
cufflinks 0.121       Low
cufflinks 1.024        
cufflinks 0.687        
cufflinks 1.347        
cufflinks 0.576        
cufflinks 1.328        
cufflinks 0.943        
cufflinks 1.806       High
cufflinks 0.782        
cufflinks 0.08     Low Low
cufflinks 1.173        
cufflinks 0.25        
cufflinks 1.567        
cufflinks 0.373        
cufflinks 0.051     Low Low
cufflinks 2.066       High

0 Strain