Gene : Seita.5G470000 S. italica v2.2
Defline:  (1 of 55) 3.6.3.44 - Xenobiotic-transporting ATPase / Steroid-transporting ATPase Genomic Order:  4700
Name:  ? Seita.5G470000 Secondary Identifier:  ? PAC:32681186
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G470000 0.5kb upstream 0.5kb upstream 8576 true scaffold_5: 47183476-47192051 Setaria italica
Seita.5G470000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 47191552-47192051 Setaria italica
Seita.5G470000 0.5kb downstream 0.5kb downstream 8576 true scaffold_5: 47182976-47191551 Setaria italica
Seita.5G470000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 47182976-47183475 Setaria italica
Seita.5G470000 1.0kb upstream 1.0kb upstream 9076 true scaffold_5: 47183476-47192551 Setaria italica
Seita.5G470000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 47191552-47192551 Setaria italica
Seita.5G470000 1.0kb downstream 1.0kb downstream 9076 true scaffold_5: 47182476-47191551 Setaria italica
Seita.5G470000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 47182476-47183475 Setaria italica
Seita.5G470000 2.0kb upstream 2.0kb upstream 10076 true scaffold_5: 47183476-47193551 Setaria italica
Seita.5G470000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 47191552-47193551 Setaria italica
Seita.5G470000 2.0kb downstream 2.0kb downstream 10076 true scaffold_5: 47181476-47191551 Setaria italica
Seita.5G470000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 47181476-47183475 Setaria italica
Seita.5G470000 5.0kb upstream 5.0kb upstream 13076 true scaffold_5: 47183476-47196551 Setaria italica
Seita.5G470000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 47191552-47196551 Setaria italica
Seita.5G470000 5.0kb downstream 5.0kb downstream 13076 true scaffold_5: 47178476-47191551 Setaria italica
Seita.5G470000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 47178476-47183475 Setaria italica
Seita.5G470000 10.0kb upstream 10.0kb upstream 18076 true scaffold_5: 47183476-47201551 Setaria italica
Seita.5G470000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 47191552-47201551 Setaria italica
Seita.5G470000 10.0kb downstream 10.0kb downstream 18076 true scaffold_5: 47173476-47191551 Setaria italica
Seita.5G470000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 47173476-47183475 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179983 5267 Panicoideae View MSA
124570336 5269 Grass View MSA
122043671 5273 Angiosperm View MSA
121348090 5274 Embryophyte View MSA
123380726 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.01        
cufflinks 11.901        
cufflinks 17.357     High High
cufflinks 12.737     High High
cufflinks 11.045     High  
cufflinks 11.387        
cufflinks 9.715        
cufflinks 7.214       Low
cufflinks 7.944        
cufflinks 7.522        
cufflinks 11.136        
cufflinks 6.987       Low
cufflinks 6.535       Low
cufflinks 9.091        
cufflinks 10.785        
cufflinks 9.629        
cufflinks 6.999       Low
cufflinks 10.032        
cufflinks 9.464        
cufflinks 8.448        

0 Strain