Gene : Seita.6G001600 S. italica v2.2
Defline:  (1 of 2) PTHR12385//PTHR12385:SF47 - CTL TRANSPORTER Genomic Order:  16
Name:  ? Seita.6G001600 Secondary Identifier:  ? PAC:32701215
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G001600 0.5kb upstream 0.5kb upstream 5088 true scaffold_6: 156028-161115 Setaria italica
Seita.6G001600 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 160616-161115 Setaria italica
Seita.6G001600 0.5kb downstream 0.5kb downstream 5088 true scaffold_6: 155528-160615 Setaria italica
Seita.6G001600 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 155528-156027 Setaria italica
Seita.6G001600 1.0kb upstream 1.0kb upstream 5588 true scaffold_6: 156028-161615 Setaria italica
Seita.6G001600 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 160616-161615 Setaria italica
Seita.6G001600 1.0kb downstream 1.0kb downstream 5588 true scaffold_6: 155028-160615 Setaria italica
Seita.6G001600 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 155028-156027 Setaria italica
Seita.6G001600 2.0kb upstream 2.0kb upstream 6588 true scaffold_6: 156028-162615 Setaria italica
Seita.6G001600 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 160616-162615 Setaria italica
Seita.6G001600 2.0kb downstream 2.0kb downstream 6588 true scaffold_6: 154028-160615 Setaria italica
Seita.6G001600 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 154028-156027 Setaria italica
Seita.6G001600 5.0kb upstream 5.0kb upstream 9588 true scaffold_6: 156028-165615 Setaria italica
Seita.6G001600 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 160616-165615 Setaria italica
Seita.6G001600 5.0kb downstream 5.0kb downstream 9588 true scaffold_6: 151028-160615 Setaria italica
Seita.6G001600 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 151028-156027 Setaria italica
Seita.6G001600 10.0kb upstream 10.0kb upstream 14588 true scaffold_6: 156028-170615 Setaria italica
Seita.6G001600 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 160616-170615 Setaria italica
Seita.6G001600 10.0kb downstream 10.0kb downstream 14588 true scaffold_6: 146028-160615 Setaria italica
Seita.6G001600 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 146028-156027 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184179 5267 Panicoideae View MSA
124586558 5269 Grass View MSA
122045224 5273 Angiosperm View MSA
121347248 5274 Embryophyte View MSA
123428295 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.02        
cufflinks 19.29     High High
cufflinks 0.157       Low
cufflinks 0.128       Low
cufflinks 0.954        
cufflinks 18.085     High High
cufflinks 8.006        
cufflinks 7.341        
cufflinks 8.553        
cufflinks 3.342        
cufflinks 8.414        
cufflinks 2.762        
cufflinks 4.225        
cufflinks 0.245       Low
cufflinks 5.693        
cufflinks 1.736        
cufflinks 3.354        
cufflinks 0.307       Low
cufflinks 0.163       Low
cufflinks 4.763        

0 Strain