Gene : Seita.6G001900 S. italica v2.2
Defline:  (1 of 1) PTHR11081:SF17 - FLAP ENDONUCLEASE GEN-LIKE 2 Genomic Order:  19
Name:  ? Seita.6G001900 Secondary Identifier:  ? PAC:32700608
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G001900 0.5kb upstream 0.5kb upstream 5588 true scaffold_6: 166568-172155 Setaria italica
Seita.6G001900 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 171656-172155 Setaria italica
Seita.6G001900 0.5kb downstream 0.5kb downstream 5588 true scaffold_6: 166068-171655 Setaria italica
Seita.6G001900 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 166068-166567 Setaria italica
Seita.6G001900 1.0kb upstream 1.0kb upstream 6088 true scaffold_6: 166568-172655 Setaria italica
Seita.6G001900 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 171656-172655 Setaria italica
Seita.6G001900 1.0kb downstream 1.0kb downstream 6088 true scaffold_6: 165568-171655 Setaria italica
Seita.6G001900 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 165568-166567 Setaria italica
Seita.6G001900 2.0kb upstream 2.0kb upstream 7088 true scaffold_6: 166568-173655 Setaria italica
Seita.6G001900 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 171656-173655 Setaria italica
Seita.6G001900 2.0kb downstream 2.0kb downstream 7088 true scaffold_6: 164568-171655 Setaria italica
Seita.6G001900 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 164568-166567 Setaria italica
Seita.6G001900 5.0kb upstream 5.0kb upstream 10088 true scaffold_6: 166568-176655 Setaria italica
Seita.6G001900 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 171656-176655 Setaria italica
Seita.6G001900 5.0kb downstream 5.0kb downstream 10088 true scaffold_6: 161568-171655 Setaria italica
Seita.6G001900 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 161568-166567 Setaria italica
Seita.6G001900 10.0kb upstream 10.0kb upstream 15088 true scaffold_6: 166568-181655 Setaria italica
Seita.6G001900 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 171656-181655 Setaria italica
Seita.6G001900 10.0kb downstream 10.0kb downstream 15088 true scaffold_6: 156568-171655 Setaria italica
Seita.6G001900 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 156568-166567 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184125 5267 Panicoideae View MSA
124573751 5269 Grass View MSA
122050954 5273 Angiosperm View MSA
121312219 5274 Embryophyte View MSA
123349413 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.39        
cufflinks 4.645       High
cufflinks 1.803        
cufflinks 1.594        
cufflinks 1.282        
cufflinks 4.761       High
cufflinks 2.353        
cufflinks 2.972       High
cufflinks 1.535        
cufflinks 1.177       Low
cufflinks 1.71        
cufflinks 1.506        
cufflinks 0.98       Low
cufflinks 1.557        
cufflinks 1.396        
cufflinks 2.341        
cufflinks 1.585        
cufflinks 1.571        
cufflinks 1.146       Low
cufflinks 1.716        

0 Strain