Gene : Seita.6G007400 S. italica v2.2
Defline:  (1 of 1) PTHR10927 - RIBOSOME MATURATION PROTEIN SBDS Genomic Order:  74
Name:  ? Seita.6G007400 Secondary Identifier:  ? PAC:32700387
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G007400 0.5kb upstream 0.5kb upstream 3719 true scaffold_6: 501282-505000 Setaria italica
Seita.6G007400 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 501282-501781 Setaria italica
Seita.6G007400 0.5kb downstream 0.5kb downstream 3719 true scaffold_6: 501782-505500 Setaria italica
Seita.6G007400 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 505001-505500 Setaria italica
Seita.6G007400 1.0kb upstream 1.0kb upstream 4219 true scaffold_6: 500782-505000 Setaria italica
Seita.6G007400 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 500782-501781 Setaria italica
Seita.6G007400 1.0kb downstream 1.0kb downstream 4219 true scaffold_6: 501782-506000 Setaria italica
Seita.6G007400 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 505001-506000 Setaria italica
Seita.6G007400 2.0kb upstream 2.0kb upstream 5219 true scaffold_6: 499782-505000 Setaria italica
Seita.6G007400 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 499782-501781 Setaria italica
Seita.6G007400 2.0kb downstream 2.0kb downstream 5219 true scaffold_6: 501782-507000 Setaria italica
Seita.6G007400 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 505001-507000 Setaria italica
Seita.6G007400 5.0kb upstream 5.0kb upstream 8219 true scaffold_6: 496782-505000 Setaria italica
Seita.6G007400 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 496782-501781 Setaria italica
Seita.6G007400 5.0kb downstream 5.0kb downstream 8219 true scaffold_6: 501782-510000 Setaria italica
Seita.6G007400 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 505001-510000 Setaria italica
Seita.6G007400 10.0kb upstream 10.0kb upstream 13219 true scaffold_6: 491782-505000 Setaria italica
Seita.6G007400 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 491782-501781 Setaria italica
Seita.6G007400 10.0kb downstream 10.0kb downstream 13219 true scaffold_6: 501782-515000 Setaria italica
Seita.6G007400 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 505001-515000 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190596 5267 Panicoideae View MSA
124572402 5269 Grass View MSA
122043852 5273 Angiosperm View MSA
121346736 5274 Embryophyte View MSA
123428704 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.386        
cufflinks 6.236       High
cufflinks 4.875        
cufflinks 4.965        
cufflinks 4.977        
cufflinks 6.711       High
cufflinks 3.926       Low
cufflinks 4.579        
cufflinks 5.156        
cufflinks 5.078        
cufflinks 4.804        
cufflinks 5.633        
cufflinks 5.186        
cufflinks 6.448       High
cufflinks 4.96        
cufflinks 4.147       Low
cufflinks 5.767        
cufflinks 5.523        
cufflinks 5.645        
cufflinks 4.735        

0 Strain