Gene : Seita.6G010800 S. italica v2.2
Defline:  (1 of 2) PTHR23315//PTHR23315:SF117 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING Genomic Order:  108
Name:  ? Seita.6G010800 Secondary Identifier:  ? PAC:32699998
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G010800 0.5kb upstream 0.5kb upstream 6546 true scaffold_6: 736893-743438 Setaria italica
Seita.6G010800 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 736893-737392 Setaria italica
Seita.6G010800 0.5kb downstream 0.5kb downstream 6546 true scaffold_6: 737393-743938 Setaria italica
Seita.6G010800 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 743439-743938 Setaria italica
Seita.6G010800 1.0kb upstream 1.0kb upstream 7046 true scaffold_6: 736393-743438 Setaria italica
Seita.6G010800 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 736393-737392 Setaria italica
Seita.6G010800 1.0kb downstream 1.0kb downstream 7046 true scaffold_6: 737393-744438 Setaria italica
Seita.6G010800 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 743439-744438 Setaria italica
Seita.6G010800 2.0kb upstream 2.0kb upstream 8046 true scaffold_6: 735393-743438 Setaria italica
Seita.6G010800 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 735393-737392 Setaria italica
Seita.6G010800 2.0kb downstream 2.0kb downstream 8046 true scaffold_6: 737393-745438 Setaria italica
Seita.6G010800 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 743439-745438 Setaria italica
Seita.6G010800 5.0kb upstream 5.0kb upstream 11046 true scaffold_6: 732393-743438 Setaria italica
Seita.6G010800 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 732393-737392 Setaria italica
Seita.6G010800 5.0kb downstream 5.0kb downstream 11046 true scaffold_6: 737393-748438 Setaria italica
Seita.6G010800 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 743439-748438 Setaria italica
Seita.6G010800 10.0kb upstream 10.0kb upstream 16046 true scaffold_6: 727393-743438 Setaria italica
Seita.6G010800 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 727393-737392 Setaria italica
Seita.6G010800 10.0kb downstream 10.0kb downstream 16046 true scaffold_6: 737393-753438 Setaria italica
Seita.6G010800 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 743439-753438 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175104 5267 Panicoideae View MSA
124571752 5269 Grass View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.418       High
cufflinks 5.569        
cufflinks 4.288       Low
cufflinks 4.336       Low
cufflinks 5.325        
cufflinks 5.38        
cufflinks 6.712        
cufflinks 3.705       Low
cufflinks 5.51        
cufflinks 5.273        
cufflinks 8.051       High
cufflinks 6.706        
cufflinks 6.304        
cufflinks 5.326        
cufflinks 7.89       High
cufflinks 8.26       High
cufflinks 5.541        
cufflinks 7.782       High
cufflinks 4.855        
cufflinks 6.661        

0 Strain